title: An efficiently transcribed human tRNA(Val) gene variant produces a stable pre-tRNA: repair of the processing defect by in vitro mutations.
abstract: A tRNA(CACVal) gene variant, pHtV4, was cloned from human placenta genomic DNA. This gene differs from a closely related, functional tRNA(CACVal) gene by four base exchanges: T residues in place of C25, C62, and C66 create G:U pairs, and an A instead of G65 creates an A:C mismatch in the corresponding RNA transcript. The tRNA(Val) gene variant in pHtV4 is efficiently transcribed in HeLa cell nuclear extracts; however, the resulting pre-tRNA is processing-deficient, i.e., neither its 5'- nor its 3'-flanking sequences are removed to generate mature tRNA. Reversion of all four point mutations in pHtV4 by oligonucleotide-directed mutagenesis yielded a functional tRNA(CACVal) gene within the flanks of pHtV4, the pre-tRNA of which was processed to mature tRNA. Construction of a chimeric tRNA(Val) gene and site-directed mutagenesis of the tRNA(Val) gene in pHtV4, respectively, followed by transcription and processing studies showed that each of the four mutations contributes to the processing defect of the pHtV4-derived pre-tRNA. Moreover, this revealed that G:U pairs, which are common in all tRNAs, can impair pre-tRNA processing and therefore do not occur in certain positions in eukaryotic tRNAs.
authors.affiliation: Institut für Biochemie, Bayerische Julius-Maximillians-Universität, Würzburg, FRG.
authors.forename: B
authors.initials: B
authors.lastname: Kahnt
authors.forename: R
authors.initials: R
authors.lastname: Frank
authors.forename: H
authors.initials: H
authors.lastname: Blöcker
authors.forename: H J
authors.initials: HJ
authors.lastname: Gross
mesh_terms: D001483:Base Sequence; D004260:DNA Repair; D006801:Humans; D008969:Molecular Sequence Data; D009154:Mutation; D012322:RNA Precursors / Q000032:analysis / Q000235:genetics*; D012345:RNA, Transfer, Amino Acid-Specific / Q000235:genetics*; D012366:RNA, Transfer, Val / Q000032:analysis / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D012322:RNA Precursors; D012345:RNA, Transfer, Amino Acid-Specific; D012366:RNA, Transfer, Val