title: A comparative study of the infrared difference spectra for octopus and bovine rhodopsins and their bathorhodopsin photointermediates.
abstract: Fourier-transform infrared difference spectroscopy has been used to detect the vibrational modes in the chromophore and protein that change in position and intensity between octopus rhodopsin and its photoproducts formed at low temperature (85 K), bathorhodopsin and isorhodopsin. The infrared difference spectra between octopus rhodopsin and octopus bathorhodopsin, octopus bathorhodopsin and octopus isorhodopsin, and octopus isorhodopsin and octopus rhodopsin are compared to analogous difference spectra for the well-studied bovine pigments, in order to understand the similarities in pigment structure and photochemical processes between the vertebrate and invertebrate systems. The structure-sensitive fingerprint region of the infrared spectra for octopus bathorhodopsin shows strong similarities to spectra of both all-trans-retinal and bovine bathorhodopsin, thus confirming chemical extraction data that suggest that octopus bathorhodopsin contains an all-trans-retinal chromophore. In contrast, we find dramatic differences in the hydrogen out-of-plane modes of the two bathorhodopsins, and in the fingerprint lines of the rhodopsins and isorhodopsins for the two pigments. These observations suggest that while the primary effect of light in the octopus rhodopsin system, as in the bovine rhodopsin system, is 11-cis/11-trans isomerization, the protein-chromophore interactions for the two systems are quite different. Finally, striking similarities and differences in infrared lines attributable to changes in amino acid residues in the opsin are found between the two pigment systems. They suggest that no carboxylic acid or tyrosine residues are affected in the initial changes of light-energy transduction in octopus rhodopsin. Comparing the amino acid sequences for octopus and bovine pigments also allows us to suggest that the carboxylic acid residues altered in the bovine transitions are Glu-122 and/or Glu-134.
authors.affiliation: Department of Physics, University of Illinois at Urbana-Champaign 61801.
authors.forename: K A
authors.initials: KA
authors.lastname: Bagley
authors.forename: L
authors.initials: L
authors.lastname: Eisenstein
authors.forename: T G
authors.initials: TG
authors.lastname: Ebrey
authors.forename: M
authors.initials: M
authors.lastname: Tsuda
mesh_terms: D000596:Amino Acids; D000818:Animals; D002417:Cattle; D049831:Octopodiformes; D010777:Photochemistry; D012168:Retinal Pigments; D012243:Rhodopsin / Q000031:analogs & derivatives; D013045:Species Specificity; D013055:Spectrophotometry, Infrared
chemical_list: D000596:Amino Acids; D012168:Retinal Pigments; C042882:isorhodopsin; C015017:bathorhodopsin; D012243:Rhodopsin