title: Comparative spectral analysis of mammalian, fungal, and bacterial catalases. Resonance Raman evidence for iron-tyrosinate coordination.
abstract: Resonance Raman spectra are reported for catalases from bovine liver, the ascomycete fungus Aspergillus niger, and the bacterium Micrococcus luteus. The vibrational frequencies of the oxidation-, spin-, and coordination number-sensitive spectral bands are indicative of high spin pentacoordinate hemes in the resting ferric enzymes of each of these organisms. This result is in accord with the crystal structure of bovine catalase (Fita, I., and Rossmann, M.G. (1985) J. Mol. Biol. 185, 21-37). In contrast, the crystallographic study of catalase from the ascomycete Penicillium vitale (Vainshtein, B. K., Melik-Adamyan, W. R., Barynin, V. V., Vagin, A.A., Grebenko, A. I., Borisov, V. V., Bartels, K. S., Fita, I., and Rossmann, M. G. (1986) J. Mol. Biol. 188, 49-61) showed electron density on the distal side of the heme which could imply the presence of a sixth ligand, possibly a water molecule. However, both of these crystallographic studies showed the proximal ligand in catalase to be a tyrosine. The present study confirms tyrosinate coordination in each of the three catalases from the appearance of selected resonance-enhanced tyrosine vibrational modes. The most characteristic band is the tyrosinate ring mode at approximately 1612 cm-1 which is maximally enhanced with 488.0 nm excitation. The appearance of tyrosinate modes at 1607 and 1245 cm-1 in the resonance Raman spectra of M. luteus cyano catalase serves to identify tyrosine as an axial ligand in bacterial as well as eukaryotic catalases. Unlike non-heme iron tyrosinate proteins, whose resonance Raman spectra are dominated by several intense bands diagnostic of tyrosine ligation, the heme-linked tyrosine modes are not easily distinguished from the large number of porphyrin vibrations.
authors.affiliation: Department of Chemical and Biological Sciences, Oregon Graduate Center, Beaverton 97006-1999.
authors.forename: K D
authors.initials: KD
authors.lastname: Sharma
authors.forename: L A
authors.initials: LA
authors.lastname: Andersson
authors.forename: T M
authors.initials: TM
authors.lastname: Loehr
authors.forename: J
authors.initials: J
authors.lastname: Terner
authors.forename: H M
authors.initials: HM
authors.lastname: Goff
mesh_terms: D000818:Animals; D001234:Aspergillus niger / Q000201:enzymology*; D001426:Bacterial Proteins / Q000378:metabolism; D002374:Catalase / Q000378:metabolism; D002417:Cattle; D005656:Fungal Proteins / Q000378:metabolism; D007501:Iron / Q000378:metabolism*; D008099:Liver / Q000201:enzymology; D008837:Micrococcus / Q000201:enzymology*; D011166:Porphyrins / Q000378:metabolism; D013059:Spectrum Analysis, Raman; D014443:Tyrosine / Q000378:metabolism*
chemical_list: D001426:Bacterial Proteins; D005656:Fungal Proteins; D011166:Porphyrins; D014443:Tyrosine; D007501:Iron; D002374:Catalase