title: 1H-n.m.r. studies on the existence of substrate binding sites in bovine pancreatic ribonuclease A.
abstract: The reaction of ribonuclease A with either 6-chloropurine riboside 5'-monophosphate or the corresponding nucleoside yields one derivative, with the reagent covalently bound to the alpha-amino group of Lys-1, called derivative II and derivative E, respectively. We studied by means of 1H-n.m.r. at 270 MHz the interaction of these derivatives with different purine ligands. The pK values of His-12- and -119 were obtained and compared with those resulting from the interaction with ribonuclease A. The results showed that the interaction of derivative E with 3'AMP is similar to that described for RNase A as the pK2 of His-12 is increased while that of His-119 remains unaltered. However, derivative II presents some differences as it was found an enhancement of the pK2 values of both His-12 and His-119. Interaction of derivative II and derivative E with dApdA increases the pK2 of His-119, whereas a decrease is found when it interacts with ribonuclease A. These results suggest that the phosphate group and the nucleoside of both derivatives are located in regions of the enzyme where natural substrate analogues have secondary interactions and they can be interpreted as additional binding sites.
authors: Department of Biochemistry and Molecular Biology, Faculty of Sciences, Free University of Barcelona, Bellaterra, Spain.
authors: J
authors: J
authors: Alonso
authors: L
authors: L
authors: Paolillo
authors: G
authors: G
authors: D'Auria
authors: M V
authors: MV
authors: Nogués
authors: C M
authors: CM
authors: Cuchillo
mesh_terms: D000249:Adenosine Monophosphate / Q000378:metabolism; D000818:Animals; D001665:Binding Sites; D002417:Cattle; D015226:Dinucleoside Phosphates / Q000378:metabolism; D006639:Histidine; D007291:Inosine Monophosphate / Q000031:analogs & derivatives*; D009682:Magnetic Resonance Spectroscopy; D015394:Molecular Structure; D010179:Pancreas / Q000201:enzymology*; D011684:Purine Nucleosides / Q000378:metabolism; D011685:Purine Nucleotides / Q000378:metabolism; D012259:Ribonuclease, Pancreatic / Q000378:metabolism*
chemical_list: D015226:Dinucleoside Phosphates; D011684:Purine Nucleosides; D011685:Purine Nucleotides; D007291:Inosine Monophosphate; C024008:6-chloropurine riboside; C020269:2'-deoxyadenylyl-(3'-5')-2'-deoxyadenosine; D000249:Adenosine Monophosphate; D006639:Histidine; C018488:6-chloropurine 9-beta-D-ribofuranosyl 5'-monophosphate; D012259:Ribonuclease, Pancreatic