Electric and flow linear dichroism of unfolded and condensed chromatin: a comparative study at low and intermediate ionic strength.
Identical samples containing polynucleosomal chains of chicken erythrocyte (CE) and Ehrlich ascites tumour (EA) chromatin were studied under various ionic conditions with regard to electric linear dichroism (ELD) and flow linear dichroism (FLD). Both orientation techniques consistently confirmed that, in the limit of very low ionic strength and in the absence of multivalent cations, the reduced linear dichroism of chromatin is negative in the DNA-base absorption band, as expected for an extended zig-zag polynucleosomal conformation. With increasing electrolyte content, both ELD and FLD decreased drastically in amplitude, but in contrast to the ELD which remains negative in an intermediate range of low ionic strength (0.1-0.5 mM Mg2+) the FLD changes sign and becomes positive. The ELD and FLD amplitudes decrease with higher Mg2+ concentrations and FLD even vanishes in the region of 0.2-0.4 mM; both signals are positive above 0.4-0.5 mM Mg2+. The origin of the dissimilarities between ELD and FLD observations is still not fully understood. Several possibilities are considered: ELD signals are more influenced than FLD by the presence of short chromatin chains, nucleosomes and small pieces of naked DNA, while FLD is more susceptible to the presence of large, easily orientable, scattering aggregates. Different preferred orientation directions of the chromatin fibre with respect to electric and hydrodynamic fields may also be involved. Finally, FLD and ELD probably "see" different features of the chromatin structure.
Hagmar
P
P
Department of Physical Chemistry, Chalmers University of Technology, Gothenburg, Sweden.
Marquet
R
R
Colson
P
P
Kubista
M
M
Nielsen
P
P
Norden
B
B
Houssier
C
C
D000818:Animals; D002645:Chickens; D002843:Chromatin; D004247:DNA; D004563:Electrochemistry; D009994:Osmolar Concentration; D011487:Protein Conformation; D013057:Spectrum Analysis / Q000379:methods
D002843:Chromatin; D004247:DNA