title: Homology of the HSV-2 "a-sequence" to cellular sequences.
abstract: Bgl-II fragments of the genome of Herpes simplex virus type 2 (HSV-2) HG-52 were cloned into the vector p-Neo and were used to screen the complete HSV-2 genome for regions cross-hybridizing with the genome of HEL cells. Most extensive cross-hybridizing activity was observed with a 530 bp SstII subfragment of the viral BamHI G DNA-fragment (contained in Bgl II F), which spans the joint and the viral a-sequence. From a lambda-L47 library, a cellular 15 kb HindIII DNA fragment was subcloned in pBR 322 which contained a 1920 bp SstII subfragment having strong cross-hybridizing activity with the 530 bp Sst II fragment of HSV-2 BamHI G. Within this 1920 bp Sst II fragment the cross-hybridizing activity was confined to a 230 bp Bgl I/Hpa II subfragment. This 230 bp fragment (including the flanking sequences) was analyzed in comparison to the viral a-sequence. Sequence data revealed a (G + C) content of 66% in the cellular and 81% in the viral DNA fragment, which is mainly determined by an extremely (G + C) rich 16-fold direct repeat (DR2) at the 5'-end. The homology between both DNA-fragments varies between 56% and 79% within the L-S inversion region. Both sequences, furthermore, show homology to the human c-myc protooncogene.
authors.affiliation: Institute for Virus Research, German Cancer Research Center, Heidelberg, Federal Republic of Germany.
authors.forename: E
authors.initials: E
authors.lastname: Kohler
authors.forename: J
authors.initials: J
authors.lastname: Kühn
authors.forename: K
authors.initials: K
authors.lastname: Munk
authors.forename: R
authors.initials: R
authors.lastname: Braun
mesh_terms: D000818:Animals; D001482:Base Composition; D001483:Base Sequence; D015139:Blotting, Southern; D002478:Cells, Cultured; D004247:DNA; D004274:DNA, Recombinant / Q000032:analysis*; D004279:DNA, Viral; D004926:Escherichia coli / Q000235:genetics; D005822:Genetic Vectors; D006801:Humans; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D010957:Plasmids; D012091:Repetitive Sequences, Nucleic Acid; D012689:Sequence Homology, Nucleic Acid; D018139:Simplexvirus / Q000235:genetics* / Q000302:isolation & purification
chemical_list: D004274:DNA, Recombinant; D004279:DNA, Viral; D004247:DNA