title: Experimental charge measurement at leaving oxygen in the bovine ribonuclease A catalyzed cyclization of uridine 3'-phosphate aryl esters.
abstract: The title esters are demonstrated to be specific substrates of bovine pancreatic ribonuclease A (EC 3.1.27.5). The Brønsted dependence of kcat/Km at pH 7.50 for the enzyme-catalyzed cyclization versus the pKa of the leaving phenol exhibits two regression lines of almost identical slope for respectively 2-chlorophenols and 2,6-unsubstituted phenols: log kcat/Km = -0.20 pKa ArOH + 5.47 (n = 5, r = 0.957); log kcat/Km = -0.17 pKa ArOH + 5.79 (n = 4, r = 0.965). Comparison of the Brønsted beta 1g's with that for the standard reaction where imidazole catalyzes the cyclization (beta 1g = -0.59) indicates considerably less development of negative charge on the leaving oxygen in the enzyme case, providing experimental evidence for the hypothesis that electrophilic assistance is involved in catalysis. The existence of two essentially parallel Brønsted correlations is not reflected in the standard reaction of substrate with imidazole. Modeling studies indicate that the phenyl ring of the substrate can take up a range of positions away from the active site; the presence of ortho chloro substituents considerably restricts the motion of the phenyl leaving group.
authors.affiliation: University Chemical Laboratories, Canterbury, England.
authors.forename: A M
authors.initials: AM
authors.lastname: Davis
authors.forename: A C
authors.initials: AC
authors.lastname: Regan
authors.forename: A
authors.initials: A
authors.lastname: Williams
mesh_terms: D000818:Animals; D002264:Carboxylic Acids / Q000378:metabolism*; D002417:Cattle; D003198:Computer Simulation; D003563:Cyclic CMP / Q000378:metabolism; D003500:Cyclization; D004952:Esters / Q000378:metabolism*; D006863:Hydrogen-Ion Concentration; D006868:Hydrolysis; D007700:Kinetics; D010100:Oxygen / Q000378:metabolism*; D010179:Pancreas / Q000201:enzymology; D012259:Ribonuclease, Pancreatic / Q000378:metabolism*; D014500:Uracil Nucleotides / Q000378:metabolism*; D014542:Uridine Monophosphate / Q000031:analogs & derivatives / Q000378:metabolism*
chemical_list: D002264:Carboxylic Acids; D004952:Esters; D014500:Uracil Nucleotides; D003563:Cyclic CMP; D014542:Uridine Monophosphate; D012259:Ribonuclease, Pancreatic; D010100:Oxygen