title: Polypeptide structure of germin as deduced from cDNA sequencing.
abstract: Synthesis of a relatively rare glycoprotein (germin) signals the onset of growth in germinating wheat embryos. Germin mRNA (1075 nucleotide residues) has an 85-residue 5'-untranslated sequence, a 69-residue sequence that can encode a 23-residue signal-peptide sequence, a 603-residue sequence that can encode a 201-residue mature-protein sequence, and a 318-residue 3'-untranslated sequence that begins with a UAA-terminator codon, ends with a 63-residue polyadenylate tract, and has three polyadenylation (and other, related) signals (AAUAAN etc.). One polyadenylation signal is just 9 nucleotides from the polyadenylation site, the shortest stretch of nucleotides yet found between polyadenylation signal and site in any animal or plant mRNA. The mature-protein coding sequence in germin mRNA contains an unusually high proportion (87%) of G + C in the third positions of its codons. The amino acid sequence of germin does not have extensive internal homologies or repetitions, and it is not characterized by regions of unusually high charge density, as is nucleoplasmin, another water-soluble homopentameric protein with otherwise closely related structural properties. Germin does, however, contain a stretch of 34 uncharged amino acid residues and these may possibly mediate its homopentameric structure and its remarkable resistance to enzymic proteolysis. In view of a possible association of germin with cellular membranes, the most interesting relatedness of the germin sequence to the sequences of other proteins is an 80% homology between a decapeptide sequence in mature germin and a decapeptide sequence in Escherichia coli glycerol-3-phosphate acyltransferase. The relation of germin-gene structure to overall gene regulation during early plant growth is discussed.
authors.affiliation: Biochemistry Department, University of Toronto, Ontario, Canada.
authors.forename: E
authors.initials: E
authors.lastname: Dratewka-Kos
authors.forename: S
authors.initials: S
authors.lastname: Rahman
authors.forename: Z F
authors.initials: ZF
authors.lastname: Grzelczak
authors.forename: T D
authors.initials: TD
authors.lastname: Kennedy
authors.forename: R K
authors.initials: RK
authors.lastname: Murray
authors.forename: B G
authors.initials: BG
authors.lastname: Lane
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D003001:Cloning, Molecular; D003488:Cyanogen Bromide; D004247:DNA / Q000302:isolation & purification*; D006023:Glycoproteins / Q000096:biosynthesis / Q000235:genetics* / Q000302:isolation & purification; D019811:Hydroxylamine; D006898:Hydroxylamines; D008969:Molecular Sequence Data; D010452:Peptide Biosynthesis; D010455:Peptides / Q000235:genetics* / Q000302:isolation & purification; D010669:Phenylthiohydantoin; D010940:Plant Proteins / Q000096:biosynthesis / Q000235:genetics* / Q000302:isolation & purification; D011498:Protein Precursors / Q000235:genetics / Q000302:isolation & purification; D012333:RNA, Messenger / Q000302:isolation & purification; D012639:Seeds / Q000032:analysis / Q000502:physiology; D014908:Triticum / Q000032:analysis*
chemical_list: D006023:Glycoproteins; D006898:Hydroxylamines; D010455:Peptides; D010940:Plant Proteins; D011498:Protein Precursors; D012333:RNA, Messenger; C058814:germin; D010669:Phenylthiohydantoin; D019811:Hydroxylamine; D004247:DNA; D003488:Cyanogen Bromide