Influence of DNA length on spermine-induced condensation. Importance of the bending and stiffening of DNA.
Using DNA restriction fragments of 258 to 4362 base-pairs, we have investigated the influence of the DNA length on the condensation process induced by spermine, with the aid of electric dichroism measurements. The 258- and 436 bp fragments condensed into rod-like particles, while the fragments of 748 bp or more condensed into torus-shaped particles. Our results suggest that a DNA molecule longer than the circumference of the toroids observed previously (680 bp) is required to serve as a nucleus for the growth of the condensed particles. The toroids were more stable in the electric field than the rod-shaped particles, suggesting that rapid fluctuations of the bound spermine counterions can provide one of the main attractive forces yielding to the condensation process. Relaxation time data for the 436 bp fragment revealed that the structure of DNA was altered at a spermine concentration as low as one-tenth of that required for condensation: the DNA became bent in the presence of spermine. Moreover, the field strength dependence of the relaxation times, as well as the fitting of the decay curves at 12.5 kV/cm, showed an increase of the stiffness of the DNA double helix upon spermine addition. We estimated that, in the case of DNA condensation by spermine, a decrease in the measured persistence length may occur, irrespective of the DNA flexibility, owing to the bending of the DNA molecule.
D001482:Base Composition; D002942:Circular Dichroism; D004247:DNA / Q000187:drug effects*; D004262:DNA Restriction Enzymes; D004563:Electrochemistry; D009690:Nucleic Acid Conformation / Q000187:drug effects*; D010957:Plasmids; D013096:Spermine / Q000494:pharmacology*
D013096:Spermine; D004247:DNA; D004262:DNA Restriction Enzymes