Computer-aided detection and alignment of weakly homologous amino acid sequences of RNA replicase beta (MS2 phage) and DNA polymerases (T7 phage and E. coli).
Alignment of the amino acid (aa) sequences of T7 phage DNA polymerase (DPase), E. coli DNA polymerase I (Pol I) and MS2 phage RNA replicase beta subunit (MS2 Repl) were established by computer-aided methods. The results showed that the entire length (aa's 16-704) of T7 DPase is homologous to Pol I aa's 207-928(C-term) with 21.5% aa identity, and that domains I (aa's-1-311) and II (312-451(C-term] were found to be homologous to each other and to N-terminal region of T7 DPase (aa's 1-250). Thus these enzymes and domains are homologous to one another and must have evolved from a co-ancestral enzyme.
Ohnishi
K
K
Department of Biology, Faculty of Science, Niigata University, Japan.
D000595:Amino Acid Sequence; D001483:Base Sequence; D003090:Coliphages / Q000201:enzymology / Q000235:genetics*; D004259:DNA-Directed DNA Polymerase / Q000235:genetics*; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics*; D005796:Genes; D005798:Genes, Bacterial; D005814:Genes, Viral; D046911:Macromolecular Substances; D008969:Molecular Sequence Data; D012316:RNA Nucleotidyltransferases / Q000235:genetics*; D012324:RNA-Dependent RNA Polymerase / Q000235:genetics*; D012689:Sequence Homology, Nucleic Acid; D012984:Software; D013604:T-Phages / Q000201:enzymology / Q000235:genetics*
D046911:Macromolecular Substances; D012316:RNA Nucleotidyltransferases; D012324:RNA-Dependent RNA Polymerase; D004259:DNA-Directed DNA Polymerase