Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them.
We present here a compilation of prokaryotic transcription terminator sequences (ref. 1-152). The compilation includes 49 independent terminators, 52 speculated independent terminators, 27 sites shown to function in vivo, and some 20 proven or speculated rho-dependent terminators. In addition to the well-known features of independent terminators (dyad symmetry and T-run), two consensus are found: CGGG(C/G) upstream and TCTG downstream of the termination point. A subset of the collection of sequence has been used to construct a computer algorithm to locate independent terminators by sequence analysis.
Brendel
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Department of Polymer Research, Weizmann Institute of Science, Rehovot, Israel.
Hamm
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Trifonov
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D000465:Algorithms; D001483:Base Sequence; D012321:DNA-Directed RNA Polymerases; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics; D005809:Genes, Regulator; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D013728:Terminator Regions, Genetic; D014158:Transcription, Genetic
D012321:DNA-Directed RNA Polymerases