Charge redistribution in proteins via linear hydrogen-bond chains.
It is proposed that proteins might activate specific atomic positions within bound substrates or co-factors by means of hydrogen-bond chains. As a result of a concerted proton (tautomeric) shift in the linked residues of the hydrogen-bond chain, which includes the bound molecule, a charge separation occurs. The charge thus generated at a specific atom of the bound molecule renders it nucleophilic or electrophilic, as the case may be, and hence 'activated' towards subsequent chemical events. To test the feasibility of the theory a survey of published X-ray diffraction determined structures was performed. A search was made for hydrogen-bond chains which emanate away from bound substrates, co-factors or metal ions in order to validate the existence of such structural arrangements. Secondly, an attempt was made to incorporate the proposed proton dynamics into the proteins' mechanisms of action. Examples in which these criteria were satisfied are carboxypeptidase A, carbonic anhydrase, haemoglobin, dihydrofolate reductase, glutathione reductase and p-hydroxybenzoate hydroxylase.
D001665:Binding Sites; D002256:Carbonic Anhydrases / Q000378:metabolism; D002268:Carboxypeptidases / Q000378:metabolism; D043422:Carboxypeptidases A; D004798:Enzymes / Q000378:metabolism*; D005980:Glutathione Reductase / Q000378:metabolism; D006454:Hemoglobins / Q000378:metabolism; D006860:Hydrogen Bonding; D006899:Mixed Function Oxygenases / Q000378:metabolism; D008958:Models, Molecular; D011487:Protein Conformation; D011506:Proteins / Q000378:metabolism*; D013762:Tetrahydrofolate Dehydrogenase / Q000378:metabolism; D014961:X-Ray Diffraction
D004798:Enzymes; D006454:Hemoglobins; D011506:Proteins; D006899:Mixed Function Oxygenases; C021385:3-hydroxybenzoate-4-monooxygenase; D013762:Tetrahydrofolate Dehydrogenase; D005980:Glutathione Reductase; D002268:Carboxypeptidases; D043422:Carboxypeptidases A; D002256:Carbonic Anhydrases