Determination of the distribution of constituent disaccharide units within the chain near the linkage region of shark-cartilage chondroitin sulfate C.
A method for analyzing the distribution of constituent disaccharide units within the chain near the linkage region of chondroitin sulfate has been developed. The method consists of (a) chemical modification of the reducing terminal residue in the polysaccharide by a 2-(2,4-dinitrophenylamino)ethylamino (DNP-AEA) group, (b) controlled fragmentation of the DNP-AEA-labeled polysaccharide with chondroitinase AC-I, followed by separation of the digestion products into the DNP-AEA-labeled fragments and unlabeled fragments on octyl-Sepharose CL-4B gel, (c) fractionation of the DNP-AEA-labeled fragments into fractions having different chain-lengths on Sephadex G-100 (superfine), and (d) determination of the disaccharide unit composition of the de-dinitropheylated products (AEA-labeled fragments) by the method combining chondroitinase AC-II treatment with HPLC analysis. A preparation of shark cartilage chondroitin sulfate C, which had been characterized well with regard to molecular species (Mr 48,000; average number of repeating disaccharide units (dpav) 93-94; consisting of chondroitin 6-sulfated 66.8%, 4-sulfated 22.5%, disulfated (D type) 10.3%, and nonsulfated units 0.4%), was analyzed by the above method. On the basis of the data obtained, distribution features of the disaccharide units within the chain near the linkage region of the polysaccharide (dpav 27) were estimated. It was, however, difficult to propose a final primary sequence of the polysaccharide chain, although there was a definite trend towards an enrichment of 4-sulfated and nonsulfated disaccharide residues in the area close to the linkage region (dpav 3-9 or 11). This was apparent together with an enrichment of 6-sulfated and disulfated disaccharide residues in the area distant from the linkage region (dpav 11 or 13-27).
D000818:Animals; D002356:Cartilage / Q000378:metabolism*; D002807:Chondroitin / Q000031:analogs & derivatives*; D002809:Chondroitin Sulfates / Q000378:metabolism*; D002850:Chromatography, Gel; D004187:Disaccharides / Q000378:metabolism*; D008970:Molecular Weight; D012754:Sharks
D004187:Disaccharides; D002807:Chondroitin; D002809:Chondroitin Sulfates