The effects of guanine and cytosine variation on dinucleotide frequency and amino acid composition in the human genome.
One hundred twelve human DNA sequences were analyzed with respect to dinucleotide frequency and amino acid composition. The variation in guanine and cytosine (G + C) content revealed: (1) at 2-3 and 3-1 doublet positions CG discrimination is attenuated at high G + C, but TA disfavor is enhanced, and (2) several amino acids are subject to G + C change. These findings have been reported in part for collections of sequences from various species. The present study confirms that in a single organism--the human--the G + C effects do exist. Aspects of the argument that connects G + C with protein thermal stability are also discussed.
Hanai
R
R
Department of Physics, Faculty of Science, University of Tokyo, Japan.
Wada
A
A
D000818:Animals; D003062:Codon; D003596:Cytosine; D005796:Genes; D014644:Genetic Variation; D006147:Guanine; D015186:Hominidae / Q000235:genetics*; D006801:Humans; D008957:Models, Genetic; D015233:Models, Statistical
D003062:Codon; D006147:Guanine; D003596:Cytosine