title: Structure and organization of Marchantia polymorpha chloroplast genome. III. Gene organization of the large single copy region from rbcL to trnI(CAU).
abstract: The nucleotide sequence (25,320 base-pairs) of a part of the large single-copy region of chloroplast DNA from the liverwort Marchantia polymorpha was determined. This region encodes putative genes for four tRNAs, isoleucine tRNA(CAU), arginine tRNA(CCG), proline tRNA(UGG) and tryptophan tRNA(CCA); eight photosynthetic polypeptides, the large subunit of ribulose bisphosphate carboxylase/oxygenase (rbcL), 51,000 Mr photosystem II chlorophyll alpha apoprotein (psbB), apocytochrome b-559 polypeptides (psbE and psbF), 10,000 Mr phosphoprotein (psbH), cytochrome f preprotein (petA), cytochrome b6 polypeptide (petB), and cytochrome b6/f complex subunit 4 polypeptide (petD); 13 ribosomal proteins (L2, L14, L16, L20, L22, L23, L33, S3, S8, S11, S12, S18 and S19); initiation factor 1 (infA); ribosome-associating polypeptide (secX); and alpha subunit of RNA polymerase (rpoA). Functionally related genes were located in several clusters in this region of the genome. There were two ribosomal protein gene clusters: rpl23-rpl2-rps19-rpl22-rps3-rpl16-+ ++rpl14-rps8-infA-secX-rps11-rpoA, with a gene arrangement similar to that of the Escherichia coli S10-spc-alpha operons, and the rps12'-rpl20-rps18-rpl33 cluster. There were gene clusters encoding photosynthesis components such as the psbB-psbH-petB-petD and the psbE-psbF clusters. Thirteen open reading frames, ranging in length from 31 to 434 amino acid residues, remain to be identified.
authors.affiliation: Research Center for Cell and Tissue Culture, Faculty of Agriculture, Kyoto University, Japan.
authors.forename: H
authors.initials: H
authors.lastname: Fukuzawa
authors.forename: T
authors.initials: T
authors.lastname: Kohchi
authors.forename: T
authors.initials: T
authors.lastname: Sano
authors.forename: H
authors.initials: H
authors.lastname: Shirai
authors.forename: K
authors.initials: K
authors.lastname: Umesono
authors.forename: H
authors.initials: H
authors.lastname: Inokuchi
authors.forename: H
authors.initials: H
authors.lastname: Ozeki
authors.forename: K
authors.initials: K
authors.lastname: Ohyama
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D002478:Cells, Cultured; D002736:Chloroplasts; D003580:Cytochromes / Q000235:genetics; D004247:DNA / Q000235:genetics*; D005796:Genes; D008969:Molecular Sequence Data; D010455:Peptides / Q000235:genetics; D010788:Photosynthesis; D010944:Plants / Q000235:genetics*; D012343:RNA, Transfer / Q000235:genetics; D012269:Ribosomal Proteins / Q000235:genetics
chemical_list: D003580:Cytochromes; D010455:Peptides; D012269:Ribosomal Proteins; D004247:DNA; D012343:RNA, Transfer