title: TGGCA protein is present in erythroid nuclei and binds within the nuclease-hypersensitive sites 5' of the chicken beta H- and beta A-globin genes.
abstract: The developmentally regulated 5'-flanking DNase-I-hypersensitive site of the chicken beta H-globin gene in nuclei contains a subregion which is resistant to DNase I and which disappears when nuclei are extracted with 0.3 M NaCl, suggesting that there are salt-extractable proteins bound to sequences within this region. The 0.3 M NaCl extract contains two proteins which bind in vitro to these sequences. One of the binding sequences has an inverted repeat very similar to that bound by TGGCA protein. Partially purified TGGCA protein from chicken liver binds to this sequence in vitro giving exactly the same footprint as that obtained with erythroid nuclear proteins. Similarly TGGCA protein binds to an inverted repeat with the beta A-globin 5'-hypersensitive site giving a footprint identical to that obtained with erythroid nuclear protein extracts. From competition footprinting experiments and the electrophoretic mobility of the protein-DNA complex, it is concluded that the erythroid proteins previously described as binding to the beta H- and beta A-globin inverted repeats within the 5'-flanking hypersensitive sites both belong to the TGGCA protein family.
authors.affiliation: Zentrum für Molekulare Biologie, Universität Heidelberg, Federal Republic of Germany.
authors.forename: R A
authors.initials: RA
authors.lastname: Rupp
authors.forename: R H
authors.initials: RH
authors.lastname: Nicolas
authors.forename: U
authors.initials: U
authors.lastname: Borgmeyer
authors.forename: V V
authors.initials: VV
authors.lastname: Lobanenkov
authors.forename: M A
authors.initials: MA
authors.lastname: Plumb
authors.forename: A E
authors.initials: AE
authors.lastname: Sippel
authors.forename: G H
authors.initials: GH
authors.lastname: Goodwin
mesh_terms: D000818:Animals; D001483:Base Sequence; D015139:Blotting, Southern; D022762:CCAAT-Enhancer-Binding Proteins; D002467:Cell Nucleus / Q000378:metabolism*; D002645:Chickens; D002843:Chromatin / Q000648:ultrastructure; D004247:DNA / Q000097:blood*; D004268:DNA-Binding Proteins / Q000097:blood*; D003850:Deoxyribonuclease I; D004912:Erythrocytes / Q000378:metabolism*; D005796:Genes; D005914:Globins / Q000235:genetics*; D008969:Molecular Sequence Data; D051839:NFI Transcription Factors; D009687:Nuclear Proteins; D010957:Plasmids; D011485:Protein Binding; D014157:Transcription Factors; D051840:Y-Box-Binding Protein 1
chemical_list: D022762:CCAAT-Enhancer-Binding Proteins; D002843:Chromatin; D004268:DNA-Binding Proteins; D051839:NFI Transcription Factors; D009687:Nuclear Proteins; D014157:Transcription Factors; D051840:Y-Box-Binding Protein 1; C070856:YBX1 protein, human; D005914:Globins; D004247:DNA; D003850:Deoxyribonuclease I