A structure of sperm whale myoglobin at a nitrogen gas pressure of 145 atmospheres.
A structure of sperm whale metmyoglobin under a nitrogen gas pressure of 145 atm (2200 psi) has been solved by X-ray diffraction using data to 2.0-A resolution. The perturbation of the gas pressure on the overall structure of the protein is minimal with a root mean square deviation of backbone atoms between the pressurized and unpressurized structures of 0.22 A. Additional electron density is observed, however, in two cavities of the protein molecule. The density is interpreted as a nitrogen molecule bound in the proximal cavity and as a water molecule hydrogen bonded in a separate cavity (cavity 3). In addition, alternate conformations are observed for three internal residues (Leu-135, Phe-138, and Ile-142) that border these cavities. These alternate conformations are not observed in atmospheric pressure structures and are presumed due to the effects of pressure and/or gas binding. The appearance of these alternate conformations implies a repacking of the protein interior and produces a new distribution of cavity spaces. The profile of the Debye-Waller factors for the pressurized structure is similar to that for the room pressure except for a small increase in the distal region (residues 61-69) of the protein.
Tilton
R F
RF
Department of Chemistry, Massachusetts Institute of Technology, Cambridge 02139.
Petsko
G A
GA
D000818:Animals; D003196:Computer Graphics; D008958:Models, Molecular; D009211:Myoglobin; D009584:Nitrogen; D011312:Pressure; D011487:Protein Conformation; D014907:Whales; D014961:X-Ray Diffraction / Q000295:instrumentation / Q000379:methods
D009211:Myoglobin; D009584:Nitrogen