Reconstruction of NOESY maps. A requirement for a reliable conformational analysis of biomolecules using 2D NMR.
The modelling of the conformation of a biomolecule in solution is based mainly on the internuclear distances deduced from measurements of nuclear Overhauser effects (nOe) in NOESY correlation maps. The distances are then used as restraints in the energy minimization procedure, which leads to one or several optimized conformations. A general and safe technique for validating these structures with respect to the experimental data is here proposed: from the internuclear distances, the relaxation matrix can be computed under the assumption of a unique rotational correlation time. By stepwise integration of these relaxation equations, the NOESY maps can be accurately reconstructed for any mixing time. Because multi-spin effects are correctly taken into account, any difference between the experimental and theoretical maps can be easily interpreted in terms of conformation, and possible inconsistencies due to conformational averaging can be pointed out. The technique is illustrated for a bacterial lipopeptide, mycosubtilin, the spectrum of which is completely assigned.
Marion
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Centre de Biophysique Moléculaire (C.N.R.S.), Orléans, France.
Genest
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Ptak
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D001704:Biopolymers; D008074:Lipoproteins; D046911:Macromolecular Substances; D009682:Magnetic Resonance Spectroscopy / Q000379:methods; D008968:Molecular Conformation; D011487:Protein Conformation
D001704:Biopolymers; D008074:Lipoproteins; D046911:Macromolecular Substances; C012448:mycosubtiline