Nonspecific interactions in dye binding to DNA. Influence of alcohols and amides.
The binding of a few drugs (ethidium bromide, propidium diiodide, proflavine and actinomycin D) to DNA has been investigated in aqueous solutions to which cosolvents of different polarity have been added. It is found that both alcohols (less polar than water) and amides (more polar) lower the binding constant according to a linear relationship between the intercalation free energy and cosolvent concentration. The main action of cosolvents cannot be described in terms of electrostatic effects, since they predict much smaller changes in the binding constant than those observed. It appears instead that relevant solvation effects are responsible for the binding strength of the different dyes to DNA. As a general result, it is found that solvation effects largely contribute to the intercalation free energy, thereby weakening the influence of nonspecific interactions at the intercalation site.
Dipartimento di Fisica, Università di Milano, Italy.
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Varani
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Della Torre
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Baldini
D000438:Alcohols; D000577:Amides; D004396:Coloring Agents; D004247:DNA; D003609:Dactinomycin; D004996:Ethidium; D007364:Intercalating Agents; D007700:Kinetics; D011370:Proflavine; D011419:Propidium
D000438:Alcohols; D000577:Amides; D004396:Coloring Agents; D007364:Intercalating Agents; D003609:Dactinomycin; D011419:Propidium; D004247:DNA; D011370:Proflavine; D004996:Ethidium