Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides.
A method is described for the inclusion of the effects of hydration in empirical conformational energy computations on polypeptides. The free energy of hydration is composed of additive contributions of various functional groups. The hydration of each group is assumed to be proportional to the accessible surface area of the group. The constants of proportionality, representing the free energy of hydration per unit area of accessible surface, have been evaluated for seven classes of groups (occurring in peptides) by least-squares fitting to experimental free energies of solution of small monofunctional aliphatic and aromatic molecules. The same method has also been applied to the modeling of the enthalpy and heat capacity of hydration, each of which is computed from the accessible surface area.
Ooi
T
T
Oobatake
M
M
Némethy
G
G
Scheraga
H A
HA
D000596:Amino Acids; D010455:Peptides; D011487:Protein Conformation; D012997:Solvents; D013499:Surface Properties; D013816:Thermodynamics; D014867:Water
D000596:Amino Acids; D010455:Peptides; D012997:Solvents; D014867:Water