[Conformational aspects of beta-trypsin interactions with substrates and pancreatic trypsin inhibitor. II. Structure of tetrahedral adducts and acylenzyme].
Theoretical conformational analysis of the tetrahedral complexes of trypsin with the N-acetyl-L-lysine methyl amide, which are formed at the acylation and the deacylation stages of the catalytical act has been carried out. The lowest energy conformations are shown to be productive ones. All favorable structures of N-acetyl-L-lysyl-trypsin and N-acetyl-L-arginyl-trypsin acylenzymes have been analysed. The global conformations of both complexes are found to be very similar with the structures providing for a transition to the second tetrahedral state. Conformations of the nonbonded, tetrahedral and acyl complexes with N-acetyl-L-lysine methyl amide are compared and the differences in orientation of atomic groups participating in the catalysis are revealed. All changes of optimal structures of the complexes indispensable for the catalytical process are shown to proceed in a spontaneous way without introduction of any intramolecular strain.
R E
RE
Aliev
N M
NM
Godzhaev
E M
EM
Popov
D000107:Acetylation; D000595:Amino Acid Sequence; D000818:Animals; D002417:Cattle; D008958:Models, Molecular; D009842:Oligopeptides; D011487:Protein Conformation; D013379:Substrate Specificity; D014357:Trypsin; D014359:Trypsin Inhibitor, Kazal Pancreatic; D014361:Trypsin Inhibitors
D009842:Oligopeptides; D014361:Trypsin Inhibitors; D014359:Trypsin Inhibitor, Kazal Pancreatic; D014357:Trypsin
Konformatsionnye aspekty vzaimodeĭstviia beta-tripsina s substratami i pankreaticheskim tripsinovym ingibitorom. II. Struktura tetraédricheskikh adduktov i atsilfermenta.