Base tilt of DNA in various conformations from flow linear dichroism.
We have measured the isotropic absorption (Aiso) and linear dichroism (LD) of Escherichia coli DNA in 0.01 M Na+ (10.4 base pairs per turn of B form), 5.5 M NH4F (10.2 base pairs per turn of B form), and 80% trifluoroethanol (A form) into the vacuum UV spectral region. The reduced dichroism spectrum (LD divided by Aiso) of DNA in the A conformation differed from those of the B conformations, demonstrating that LD is a sensitive method for distinguishing DNA conformation. The reduced dichroism spectra of the B conformations were similar, indicating little change in the orientation of the bases for DNA in high salt. The wavelength dependence of the reduced dichroism indicates that the angle between the base planes and the helix axis is less than 76 degrees for all three conformations of DNA.
D001482:Base Composition; D002942:Circular Dichroism / Q000379:methods; D004269:DNA, Bacterial; D004926:Escherichia coli; D007700:Kinetics; D009690:Nucleic Acid Conformation; D012964:Sodium; D013056:Spectrophotometry, Ultraviolet / Q000379:methods
D004269:DNA, Bacterial; D012964:Sodium