[Deacylated tRNA binds with 50S subunits of Escherichia coli ribosomes at a special site not corresponding to the P'-site].
In the presence of methanol 50S ribosomal subunits reveal two independents sites for binding of deacylated tRNA and/or AcPhe-tRNA. The site with lower affinity was identified with the donor (P') site as the dissociation constant (Ka) for AcPhe-tRNA was equal to the Michaelis constant for its reaction with puromycin both at 0 degrees C and 25 degrees C. Log Ka increases linearly with methanol concentration. This suggests that there are no conformational transitions of the interacting components, the affinity increases only quantatively due to lowering of the dielectric constant of water, and the site can exist even in the absence of methanol, but its Ka may be too low to be measured. It follows from these data that the higher-affinity site, which is observed both in the absence and presence of methanol, cannot be the P' site as it was generally believed. By all its properties it is more like the additional E site, which has been recently found on 70S ribosomes. Specifically, its affinity for deacylated tRNA is about 1000-fold higher than for AcPhe-tRNA (in the P'-site they are almost the same).
D001665:Binding Sites; D004926:Escherichia coli / Q000378:metabolism*; D007700:Kinetics; D011691:Puromycin / Q000494:pharmacology; D012343:RNA, Transfer / Q000378:metabolism*; D012346:RNA, Transfer, Amino Acyl / Q000378:metabolism; D012270:Ribosomes / Q000378:metabolism*
D012346:RNA, Transfer, Amino Acyl; D011691:Puromycin; D012343:RNA, Transfer
Dezatsilirovannaia tRNK sviazyvaetsia s 50S subchastitseĭ ribosom Escherichia coli na spetsial'nom uchastke, ne sovpadaiushchem s uchastkom P'.