title: Effects of anion binding on the deprotonation reactions of halorhodopsin.
abstract: The retinal Schiff base of halorhodopsin deprotonates with a pKa of 7.4 in 0.5 M Na2SO4 in the dark. In the presence of various anions, such as chloride or nitrate, etc., the pKa is raised by up to 1.5 units. Analysis of the dependency of the pKa on anion concentration favors the model in which the anions do not bind to the positively charged Schiff base nitrogen, but to a site near it, and exert their effect on the pKa by direct (perhaps electrostatic) interaction. Adding nitrate, or one of several other anions, causes also a small blueshift in the visible absorption band of the chromophore. These effects on the pKa and the absorption band define an anion binding site in halorhodopsin, termed Site I. Chloride and bromide apparently bind in addition to another site, which is associated with a small red-shift of the absorption band and changes in the photocycle. This other anion binding site is termed Site II. Illumination of halorhodopsin samples results in the deprotonation of the Schiff base with a much lowered pKa, but at very low rates probably determined by the generation of a deprotonating photointermediate. Binding of Site I anions increases the pKa of deprotonation in the light also. The similarity of the responses of the apparent pKa in the dark and in the light to anion concentration suggests that anion binding to Site I influences deprotonation of the Schiff base similarly in the photointermediate and in the parent halorhodopsin molecule.
mesh_terms: D000838:Anions / Q000494:pharmacology*; D001436:Bacteriorhodopsins / Q000378:metabolism*; D001965:Bromides / Q000494:pharmacology; D002338:Carotenoids / Q000378:metabolism*; D002712:Chlorides / Q000494:pharmacology; D006217:Halobacterium; D025602:Halorhodopsins; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008027:Light; D008433:Mathematics; D009566:Nitrates / Q000494:pharmacology; D013053:Spectrophotometry
chemical_list: D000838:Anions; D001965:Bromides; D002712:Chlorides; D025602:Halorhodopsins; D009566:Nitrates; D002338:Carotenoids; D001436:Bacteriorhodopsins