title: Myoglobin structure and regulation of solvent accessibility of heme pocket.
abstract: The effects of heme removal on the molecular structure of tuna and sperm whale myoglobin have been investigated by comparing the solvent accessibility to the heme pocket of the two proteins with that of the corresponding apoproteins. Although the heme microenvironment of tuna myoglobin is more polar than that of sperm whale myoglobin, the accessibility of solvent to heme is identical in the two proteins as revealed by thermal perturbation of Soret absorption. The removal of heme produces loss of helical folding and increase of solvent accessibility but the effects are rather different for the two proteins. More precisely, the loss of helical structure upon heme removal is 50% for tuna myoglobin and 15% for sperm whale myoglobin; moreover, the solvent accessibility of the heme pocket of tuna apomyoglobin is 2-3-fold greater than that of sperm whale apomyoglobin. These results have been explained in terms of the lack of helical folding in segment D, the structural organization of which may have a relevant effect in regulating the accessibility of ligands to the heme. The effects produced by charged quenchers reveal that the ligand path from the surface of the molecule to the ion atom of the heme involves a positively charged residue which may reasonably be identified as Arg-45 (sperm whale myoglobin) or Lys-41 (tuna myoglobin) on the basis of recent X-ray crystallographic information.
mesh_terms: D000818:Animals; D001665:Binding Sites; D002020:Buffaloes; D002417:Cattle; D004289:Dolphins; D006418:Heme / Q000378:metabolism*; D009211:Myoglobin / Q000378:metabolism*; D011485:Protein Binding; D011487:Protein Conformation; D012997:Solvents; D013045:Species Specificity; D013816:Thermodynamics; D014413:Tuna; D014907:Whales
chemical_list: D009211:Myoglobin; D012997:Solvents; D006418:Heme