Optically detected magnetic resonance of Escherichia coli glutamic acid specific transfer ribonucleic acid and its anticodon-anticodon complex with yeast phenylalanine-specific transfer ribonucleic acid.
The low-temperature phosphorescence and the optically detected magnetic resonance (ODMR) spectra of Escherichia coli tRNA2Glu and its anticodon-anticodon complex with yeast tRNAPhe are reported. The ODMR signals are assigned to the modified base 5-[(methylamino)-methyl]-2-thiouracil (mnm5S2U) located at the "wobble" position of the anticodon. The zero-field splittings (zfs) are larger than those found for 1-methyl-2-thiouracil previously studied in a 1-methyluracil host system by ODMR. They are comparable, however, to those found for neat, polycrystalline 1-methyl-2-thiouracil and for the latter dissolved in ethyl acetate solvent. In the polycrystalline sample, five traps with widely varying zfs are assigned. A very large (15-25%) reduction in the D parameter of mnm5S2U is found to occur on formation of the anticodon-anticodon complex with yeast tRNAPhe. Additional ODMR signals found in the complex are assigned to the wybutine base of yeast tRNAPhe. The extreme sensitivity of the zfs parameters of S2U to environmental perturbations is ascribed to the variable involvement of the heavy atom containing chromophore, C = S, in the triplet-state wave function, which is largely localized on the C = C - C = O portion of the molecule.
D000926:Anticodon; D004926:Escherichia coli / Q000032:analysis*; D009682:Magnetic Resonance Spectroscopy; D012329:RNA, Bacterial; D012331:RNA, Fungal; D012343:RNA, Transfer; D012346:RNA, Transfer, Amino Acyl; D012441:Saccharomyces cerevisiae / Q000032:analysis*
D000926:Anticodon; D012329:RNA, Bacterial; D012331:RNA, Fungal; D012346:RNA, Transfer, Amino Acyl; D012343:RNA, Transfer