Crystallographic study of mechanism of ribonuclease T1-catalysed specific RNA hydrolysis.
Ribonuclease T1 (RNase T1) cleaves the phosphodiester bond of RNA specifically at the 3'-end of guanosine. 2'-guanosinemonophosphate (2'-GMP) acts as inhibitor for this reaction and was cocrystallized with RNase T1. X-Ray analysis provided insight in the geometry of the active site and in the parts of the enzyme involved in the recognition of guanosine. RNase T1 is globular in shape and consists of a 4.5 turns alpha-helix lying "below" a four-stranded antiparallel beta-sheet containing recognition center as well as active site. The latter is indicated by the position of phosphate and sugar residues of 2'-GMP and shows that Glu58, His92 and Arg77 are active in phosphodiester hydrolysis. Guanine is recognized by a stretch of protein from Tyr42 to Tyr45. Residues involved in recognition are peptide NH and C = O, guanine O6 and N1H which form hydrogen bonds and a stacking interaction of Tyr45 on guanine. Although, on a theoretical basis, many specific amino acid-guanine interactions are possible, none is employed in the RNase T1.guanine recognition.
D000595:Amino Acid Sequence; D001665:Binding Sites; D004722:Endoribonucleases; D006147:Guanine; D006868:Hydrolysis; D008969:Molecular Sequence Data; D011487:Protein Conformation; D012313:RNA; D006163:Ribonuclease T1; D012260:Ribonucleases; D012689:Sequence Homology, Nucleic Acid; D014961:X-Ray Diffraction
D006147:Guanine; D012313:RNA; D004722:Endoribonucleases; D012260:Ribonucleases; D006163:Ribonuclease T1