Regulation of small RNAs in Escherichia coli. Alteration in the intracellular concentrations of small RNAs during amino acid and energy starvation.
The accumulation of low molecular weight RNAs in Escherichia coli cells following amino acid or energy source starvation was examined using two-dimensional polyacrylamide gel electrophoresis. 32P-labeled small RNA prepared from serine- or isoleucine-starved stringent strain (relA+) cells was shown to display gel patterns that were grossly different from that of unstarved cells. It appears that the deprivation of serine or isoleucine has little or no inhibitory effect on the accumulation of transfer RNA cognate to the deprived amino acid. This is demonstrated by a relative increase in the concentrations of small RNAs that can be charged with serine or isoleucine following starvation of these amino acids. However, small RNAs labeled during starvation of phenylalanine or energy source showed gel patterns similar to that of control cells. This suggested a heterogenous response in the accumulation of some low molecular weight RNAs, presumably transfer RNAs, following starvation of different amino acids.
D000596:Amino Acids / Q000494:pharmacology*; D004591:Electrophoresis, Polyacrylamide Gel; D004734:Energy Metabolism; D004926:Escherichia coli / Q000378:metabolism*; D007532:Isoleucine / Q000172:deficiency; D008970:Molecular Weight; D010649:Phenylalanine / Q000172:deficiency; D012329:RNA, Bacterial / Q000302:isolation & purification / Q000378:metabolism*; D012343:RNA, Transfer / Q000302:isolation & purification / Q000378:metabolism*; D012694:Serine / Q000172:deficiency
D000596:Amino Acids; D012329:RNA, Bacterial; D007532:Isoleucine; D012694:Serine; D010649:Phenylalanine; D012343:RNA, Transfer