ATP-dependent exonuclease V from Micrococcus luteus. The enzyme-DNA complex, the processive mechanism, and the role of ATP.
Some kinetic predictions of the proposed processive mechanism for the hydrolysis of DNA by the ATP-dependent enzyme exonuclease V have been checked. The method is to trap enzyme molecules not attached to radioactive DNA substrate with an excess of nonradioactive DNA, so that enzyme molecules attached to the radioactive substrate contribute to the liberation of radioactive products only until they dissociate from it. The experiments show that enzyme molecules remain attached to a T7 double-stranded DNA molecule, while hydrolysing it, for about 2 min under our conditions, in agreement with the predictions of the processive mechanism. However, the mechanism of degradation of single-stranded DNA is not processive. Formation of an enzyme-DNA complex is largely dependent on the presence of ATP. This formation does not appear to be synchronous. ATP analogs do not stimulate formation of, nor stabilize, the enzyme-DNA complex. EDTA causes dissociation of enzyme molecules from the DNA complex.
D000255:Adenosine Triphosphate / Q000494:pharmacology*; D004279:DNA, Viral / Q000378:metabolism*; D003851:Deoxyribonucleases / Q000378:metabolism*; D004492:Edetic Acid / Q000494:pharmacology; D005092:Exonucleases / Q000378:metabolism*; D007700:Kinetics; D046911:Macromolecular Substances; D008837:Micrococcus / Q000201:enzymology*
D004279:DNA, Viral; D046911:Macromolecular Substances; D000255:Adenosine Triphosphate; D004492:Edetic Acid; D003851:Deoxyribonucleases; D005092:Exonucleases