title: Individual assignments of the amide proton resonances involved in the triple-stranded antiparallel pleated beta-sheet structure of a long neurotoxin, Laticauda semifasciata III from Laticauda semifasciata.
abstract: THe characteristic feature of the crystal structure of erabutoxin b, a short neurotoxin from Laticauda semifasciata, and alpha-cobratoxin, a long neurotoxin from Naja naja siamensis, is the presence of a triple-stranded antiparallel pleated beta-sheet structure formed by the central and the third peptide loops. In the present study, we have studied the assignment of slowly exchangeable amide protons of Laticauda semifasciata III from L. semifasciata, using nuclear Overhauser effects (NOE) and spin-decoupling methods. The results show that nearly all of the slowly exchangeable amide protons are to be assigned to the back-bone amide protons, involved in the triple-stranded antiparallel pleated beta-sheet structure, indicating that this sheet is stable in 2H2O solution. In contrast, the amide protons in short neurotoxins are readily exchangeable under the same experimental condition, suggesting that long neurotoxins have a more rigid sheet structure than short ones. This rigidity may come from the hydrophobic and hydrogen bond interaction between the central loop and the tail, which is not present in short neurotoxins. Since the functionally important residues are located on this beta-sheet, the different kinetic properties of the neurotoxins are well correlated with the difference in the rigidity of the beta-sheet.
mesh_terms: D000588:Amines / Q000032:analysis*; D055598:Chemical Phenomena; D002621:Chemistry; D004546:Elapid Venoms; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D009498:Neurotoxins; D011506:Proteins; D011522:Protons; D030162:Reptilian Proteins
chemical_list: D000588:Amines; D004546:Elapid Venoms; D009498:Neurotoxins; D011506:Proteins; D011522:Protons; D030162:Reptilian Proteins; C027050:Laticauda semifasciata III