Relationship between superhelical density and cruciform formation in plasmid pVH51.
The relative stability of the cruciform state at the large inverted repeat of plasmid pVH51 is measured. At physiological superhelical densities, the cruciform state is present in a high percentage of the plasmid molecules. Investigation of the relationship between negative superhelical density and cruciform prevalence reveals a sharp transition from an undetectable level to a relatively stable state. This transition occurs over the negative superhelical density range of 0.046 to 0.066. Estimates of the free energy contribution to cruciform formation resulting from loss of negative superhelical turns suggest that about 22 kcal/mol are required to generate the cruciform structure at this site in pVH51.
D002151:Calorimetry; D004278:DNA, Superhelical / Q000235:genetics*; D004720:Endonucleases; D004926:Escherichia coli / Q000235:genetics*; D007700:Kinetics; D009690:Nucleic Acid Conformation; D010957:Plasmids; D015719:Single-Strand Specific DNA and RNA Endonucleases
D004278:DNA, Superhelical; D004720:Endonucleases; D015719:Single-Strand Specific DNA and RNA Endonucleases