Proton coupling in the ligand-binding reaction of ferric cytochrome P-450 from Pseudomonas putida.
Effects of pH on the ligand-binding reactions of ferric heme in cytochrome P-450 from Pseudomonas putida (camphor 5-monooxygenase, EC 1.14.15.1) were studied by using cyanide, N-methylimidazole, pyridine, and ethylisocyanide as ligands. In all cases, affinity of the ferric heme for the ligand was found to increase as pH of the medium was raised from around 6 to 9. Depending on the ligand, the increase was 10- to 1000-fold and the shapes of their pH-affinity curves were remarkably different. Analyses such pH profiles disclosed the presence of a dissociable group in the enzyme with a pK value of approximately 9.5 and that its ionization greatly enhanced the affinity of the heme for ligands. When a dissociable ligand such as hydrogen cyanide and N-methylimidazole was used, the dissociated form of the ligand had a higher affinity toward the heme than the undissociated form. The shapes of the pH-affinity curves were successfully simulated as overlapping curves of ionization reactions of the ligand and the dissociable group. In addition, size of the ligand molecule was shown to be also important in the binding reaction: relatively large molecules such as pyridine, ethylisocyanide, and N-methylimidazole bound to the enzyme in a competitive manner against d-camphor concentration, whereas the binding of a smaller molecule such as cyanide was inhibited by the substrate in a noncompetitive manner. On the basis of these findings, control mechanisms for the ligand-binding reactions of the cytochrome P-450 from P. putida are discussed.
D001426:Bacterial Proteins / Q000378:metabolism; D001665:Binding Sites; D002164:Camphor / Q000378:metabolism; D003577:Cytochrome P-450 Enzyme System / Q000378:metabolism*; D006863:Hydrogen-Ion Concentration; D008024:Ligands / Q000378:metabolism*; D009570:Nitriles / Q000378:metabolism; D011190:Potassium Cyanide / Q000378:metabolism; D011522:Protons; D011549:Pseudomonas / Q000201:enzymology*; D011725:Pyridines / Q000378:metabolism; D013379:Substrate Specificity
D001426:Bacterial Proteins; D008024:Ligands; D009570:Nitriles; D011522:Protons; D011725:Pyridines; C001187:ethyl isocyanide; D002164:Camphor; D003577:Cytochrome P-450 Enzyme System; D011190:Potassium Cyanide; C023666:pyridine