Linear free-energy relationships in binding of oxygen and carbon monoxide with heme model compounds and heme proteins.
For almost a decade heme model compounds have been designed to test the influence of proximal base restraint or of distal steric hindrance upon the ligand affinity of hemoglobins. Despite the variety of molecular structures which have been successively proposed, the evaluation of the reported data is rendered difficult because of the small number of examples available within each series. In this paper we report on the kinetics of binding of oxygen and carbon monoxide with a series of nine closely related heme models. The 'basket-handle porphyrins' allow one to modify the constraints exerted upon a chelated proximal base as well as the chemical environment of the distal side of the heme. One salient feature of these models is the possibility of introducing a hydrogen-bond stabilization of the oxygen by incorporating an amide group in the vicinity of the iron centre. The structural changes among models are sufficiently 'soft' to cause an almost continuous variation of the binding constants and rate parameters. The latter are found to obey a definite linear free energy relationship which proves that the series is homogenous from a thermodynamic viewpoint. This suggests an alternative way for comparing the trends in ligand binding in different heme model families with those of heme proteins, which is developed in the discussion using literature data.
D000577:Amides; D002248:Carbon Monoxide / Q000097:blood*; D055598:Chemical Phenomena; D002621:Chemistry; D004987:Ethers; D006418:Heme / Q000378:metabolism*; D006420:Hemeproteins / Q000378:metabolism*; D006860:Hydrogen Bonding; D007700:Kinetics; D008968:Molecular Conformation; D010084:Oxidation-Reduction; D010100:Oxygen / Q000097:blood*; D011485:Protein Binding; D013816:Thermodynamics
D000577:Amides; D004987:Ethers; D006420:Hemeproteins; D006418:Heme; D002248:Carbon Monoxide; D010100:Oxygen