An algorithm for the bonding-probability map of nucleic acid secondary structure.
We report a more efficient and well-defined algorithm for predicting a secondary structure of single-stranded nucleic acid from a primary nucleotide sequence. Using this algorithm, one- and two-dimensional bonding-probability maps of 5S rRNA of thermus thermophilus HB8 were calculated. These maps well express the stability of the secondary structure.
D055598:Chemical Phenomena; D002627:Chemistry, Physical; D006860:Hydrogen Bonding; D008962:Models, Theoretical; D009690:Nucleic Acid Conformation; D012335:RNA, Ribosomal; D013824:Thermus
D012335:RNA, Ribosomal