A 1H NMR comparison of the met-cyano complexes of elephant and sperm whale myoglobin. Assignment of labile proton resonances in the heme cavity and determination of the distal glutamine orientation from relaxation data.
The met-cyano complex of elephant myoglobin has been investigated by high field 1H NMR spectroscopy, with special emphasis on the use of exchangeable proton resonances in the heme cavity to obtain structural information on the distal glutamine. Analysis of the distance dependence of relaxation rates and the exchange behavior of the four hyperfine shifted labile proton resonances has led to the assignment of the proximal His-F8 ring and peptide NHs and the His-FG3 ring NH and the distal Gln-E7 amide NH. The similar hyperfine shift patterns for both the apparent heme resonances as well as the labile proton peaks of conserved resonances in elephant and sperm whale met-cyano myoglobins support very similar electronic/molecular structures for their heme cavities. The essentially identical dipolar shifts and dipolar relaxation times for the distal Gln-E7 side chain NH and the distal His-E7 ring NH in sperm whale myoglobin indicate that those labile protons occupy the same geometrical position relative to the iron and heme plane. This geometry is consistent with the distal residue hydrogen bonding to the coordinated ligand. The similar rates and identical mechanisms of exchange with bulk water of the labile protons for the three conserved residues in the elephant and sperm whale heme cavity indicate that the dynamic stability of the proximal side of the heme pocket is unaltered upon the substitution (His----Gln). The much slower exchange rate (by greater than 10(4] of the distal NH in elephant relative to sperm whale myoglobin supports the assignment of the resonance to the intrinsically less labile amide side chain.
D000818:Animals; D002591:Cetacea / Q000378:metabolism*; D004606:Elephants / Q000378:metabolism*; D005973:Glutamine / Q000032:analysis*; D006418:Heme / Q000032:analysis; D006420:Hemeproteins / Q000378:metabolism*; D009682:Magnetic Resonance Spectroscopy / Q000379:methods; D008786:Metmyoglobin / Q000031:analogs & derivatives / Q000378:metabolism*; D009211:Myoglobin / Q000378:metabolism*; D013045:Species Specificity; D014907:Whales / Q000378:metabolism*
D006420:Hemeproteins; D009211:Myoglobin; C007177:cyanometmyoglobin; D005973:Glutamine; D008786:Metmyoglobin; D006418:Heme