Combined effect of restricted rotational diffusion plus jumps on nuclear magnetic resonance and fluorescence probes of aromatic ring motions in proteins.
A simple model is presented for the motion of phenylalanine and tyrosine rings in proteins. The model consists of restricted rotational diffusion of the rings about the side chain C alpha--C beta (chi 1) and C beta--C gamma (chi 2) axes combined with 180 degree ring flips. The model is used to evaluate order parameters for nuclear magnetic resonance relaxation and fluorescence depolarization probes of aromatic ring motions in proteins. The dependence of the order parameters on orientation in the ring plane is examined and it is demonstrated that in the presence of ring flips, additional ring librations can have a large effect on the probe order parameters.
D055598:Chemical Phenomena; D002627:Chemistry, Physical; D004058:Diffusion; D005456:Fluorescent Dyes; D009682:Magnetic Resonance Spectroscopy; D008956:Models, Chemical; D009904:Optical Rotation; D011506:Proteins
D005456:Fluorescent Dyes; D011506:Proteins