The capsid protein of Semliki Forest virus has clusters of basic amino acids and prolines in its amino-terminal region.
The amino acid sequence of the capsid (C) protein was deduced from the nucleotide sequence of the C gene. This part of the viral 42S RNA genome was transcribed into double-stranded cDNA. The cDNA was cloned in the Escherichia coli chi 1776-pBR322 host-vector system and then the base sequence was determined with the technique described by Maxam and Gilbert. The amino acid sequence of the C protein shows a clustering of basic amino acids and prolines within the first 110 amino acids.
D000595:Amino Acid Sequence; D001483:Base Sequence; D002213:Capsid / Q000032:analysis* / Q000378:metabolism; D004279:DNA, Viral / Q000235:genetics; D005814:Genes, Viral; D011392:Proline; D012367:RNA, Viral / Q000378:metabolism; D012261:Ribonucleoproteins / Q000378:metabolism; D012672:Semliki forest virus / Q000032:analysis*; D014764:Viral Proteins / Q000032:analysis*
D004279:DNA, Viral; D012367:RNA, Viral; D012261:Ribonucleoproteins; D014764:Viral Proteins; D011392:Proline