title: Optical activity and electronic absorption spectra of some simple nucleosides related to cytidine and uridine: all-valence-shell molecular orbital calculations.
abstract: The circular dichroism and electronic absorption of three simple model systems for cytidine and uridine have been measured to 190 nm. The molecular spectral properties (excitation wavelengths, oscillator strengths, rotational strengths, and polarization directions) and electronic transitional patterns were investigated by using wave functions of the entire nucleoside with the goal of establishing the reliability of the theoretical method. The computed electronic absorption quantities were shown to be in satisfactory agreement with experimental data. It was found that the computed optical rotatory strengths of the B2u and E1u electronic transitions and lowest observed n-pi transition are in good agreement with experimental values. Electronic transitions were characterized by their electronic transitional patterns derived from population analysis of the transition density matrix. The theoretical rotational strengths associated with the B2u and E1u transitions stabilize after the use of just a few singly excited configurations in the configuration interaction basis and, hypothetically, are more reliable as indicators of conformation in pyrimidine nucleosides related to cytidine.
mesh_terms: D015092:3-Deazauridine; D000970:Antineoplastic Agents; D002942:Circular Dichroism; D003562:Cytidine / Q000031:analogs & derivatives*; D003857:Deoxyuridine / Q000031:analogs & derivatives*; D009690:Nucleic Acid Conformation; D013056:Spectrophotometry, Ultraviolet; D013057:Spectrum Analysis; D014529:Uridine / Q000031:analogs & derivatives
chemical_list: D000970:Antineoplastic Agents; D015092:3-Deazauridine; C000852:3-deazacytidine; C033906:3-deaza-4-deoxyuridine; D003562:Cytidine; D003857:Deoxyuridine; D014529:Uridine