PREDITOP: a program for antigenicity prediction.
A program (PREDITOP) for predicting the location of antigenic regions (or epitopes) on proteins is described. This program and the associated ones are written in Turbo Pascal and run on IBM-PC compatibles. The program contains 22 normalized scales, corresponding to hydrophilicity, accessibility, flexibility, or secondary structure propensities. New scales are easily implemented. An hydrophobic moment procedure has also been implemented in order to determine amphiphilic helices. The program generates a result file where the values represent a particular physicochemical aspect of the studied protein. PREDITOP can display one or several result files by simple graphical super-imposition. Curve combinations can be done by the ADDITIO or MULTIPLI routines which create a new result file by adding or multiplying previously calculated files representing several propensities. The program is useful and efficient for identifying potential antigenic regions in a protein with the aim of raising antibodies against synthesized peptides which cross-react with the native protein.
Pellequer
J L
JL
UPR Structure des Macromolécules Biologiques et Mécanismes de Reconnaissance, Institut de Biologie Moléculaire et Cellulaire du CNRS, France.
Westhof
E
E
D000941:Antigens / Q000737:chemistry*; D003196:Computer Graphics; D000939:Epitopes / Q000737:chemistry; D011506:Proteins / Q000737:chemistry* / Q000276:immunology*; D012984:Software; D012985:Software Design
D000941:Antigens; D000939:Epitopes; D011506:Proteins