title: The rat liver epithelial (RLE) cell nuclear protein database.
abstract: The master two-dimensional computer database of rat liver epithelial (RLE) cellular proteins (Wirth et al., Electrophoresis 1991, 12, 931-954) has been expanded to include detailed information concerning 1100 nucleoplasmic (cytosolic) and 850 particulate associated [35S]methionine labeled as well as 215 nucleoplasmic and 269 particulate associated [32P]orthophosphate labeled RLE nuclear polypeptides, respectively. The RLE nuclear protein database developed using the Elsie 5 gel analysis system contains both qualitative and quantitative annotations including polypeptide identification number, protein name (if known), molecular weight and pI information, quantitation and polypeptide spot shape, subcellular location, as well as specific information regarding transformation (chemical and spontaneous) and growth-related characteristics. Microsequencing of polypeptides directly from two-dimensional (2-D) blotted membranes has recently been established in our laboratory and provides a highly efficient and rapid means of polypeptide identification in the absence of specific antibodies. At present the RLE protein database is still in the developmental stage and is continually being updated as additional information is obtained. Nonetheless, it is anticipated that knowledge obtained concerning the identification and characterization of specific transformation and/or growth regulatory proteins in the RLE in vitro cell system will not only have direct application to other rodent and human 2-D protein databases currently under development but will also complement them.
authors.affiliation: Biopolymer Chemistry Section, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892.
authors.forename: P J
authors.initials: PJ
authors.lastname: Wirth
authors.forename: L D
authors.initials: LD
authors.lastname: Luo
authors.forename: T
authors.initials: T
authors.lastname: Benjamin
authors.forename: T N
authors.initials: TN
authors.lastname: Hoang
authors.forename: A D
authors.initials: AD
authors.lastname: Olson
authors.forename: D C
authors.initials: DC
authors.lastname: Parmelee
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001391:Azo Compounds; D002467:Cell Nucleus / Q000737:chemistry / Q000648:ultrastructure; D016208:Databases, Factual; D015180:Electrophoresis, Gel, Two-Dimensional; D004848:Epithelium / Q000737:chemistry / Q000648:ultrastructure; D008099:Liver / Q000737:chemistry* / Q000648:ultrastructure; D008715:Methionine / Q000378:metabolism; D008969:Molecular Sequence Data; D009687:Nuclear Proteins / Q000032:analysis / Q000737:chemistry*; D010710:Phosphates / Q000378:metabolism; D051381:Rats; D013194:Staining and Labeling
chemical_list: D001391:Azo Compounds; D009687:Nuclear Proteins; D010710:Phosphates; D008715:Methionine; C032756:ponceau S