The 16S rRNA sequence and genome sizing of tributyltin resistant marine bacterium, strain M-1.
The 16S rRNA of the tributyltin resistant marine bacterium, strain M-1, was partly sequenced to confirm the taxonomic status. The results indicated that this bacterium should be classified under the genus Alteromonas, instead of a previous report in which this strain was identified as a Vibrio. The genome size of this strain was also measured by pulsed field gel electrophoresis (PFGE) using a contoureclamped homogeneous electric field. The strain was found to contain a genome size of 2,240 kilo base pairs, whereas Alteromonas nigrifaciens and Shewanella putrefaciens had 2,040 and 2,383 kilo base pairs, respectively. This is the first report of the genome sizing of the genus Alteromonas by PFGE.
Suzuki
S
S
Faculty of Agriculture, Kochi University, Japan.
Kita-Tsukamoto
K
K
Fukagawa
T
T
D001483:Base Sequence; D004352:Drug Resistance, Microbial; D004587:Electrophoresis, Agar Gel; D016680:Genome, Bacterial; D006088:Gram-Negative Aerobic Bacteria / Q000145:classification* / Q000235:genetics; D008969:Molecular Sequence Data; D008970:Molecular Weight; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics*; D012623:Seawater; D017423:Sequence Analysis, RNA; D012689:Sequence Homology, Nucleic Acid; D014220:Trialkyltin Compounds / Q000494:pharmacology*; D014733:Vibrio / Q000145:classification* / Q000235:genetics; D014871:Water Microbiology
D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S; D014220:Trialkyltin Compounds; C011559:tributyltin