title: Conformational study of a synthetic analogue of alamethicin. Influence of the conformation on ion-channel lifetimes.
abstract: Alamethicin, a 20-residue peptaibol, induces voltage-dependent ion channels in lipid bilayers according to the barrel-stave model. A synthetic analogue (L2) in which all Aib were replaced by Leu shows a conductance behaviour similar to alamethicin, but channel lifetimes are drastically reduced. Among several hypotheses, a different conformation for L2 might be responsible for this phenomenon by increasing the alpha-helical content (alamethicin presents some 3.0(10)-helical parts) and thus decreasing the length of the transmembrane part. A conformational study of L2 was undertaken using FTIR, CD and NMR spectroscopy, and the secondary structure was compared with alamethicin. These techniques showed an enhanced predominant helical structure as compared to alamethicin. Moreover, the NOE pattern showed an exclusively alpha-helical conformation, resulting in a smaller length of the L2 peptide. This shortening somewhat impedes the complete crossing of the membrane, and could then explain the reduction of its ion-channel lifetimes.
authors.affiliation: URA 500 CNRS, University of Rouen, Faculty of Science, Mount-Saint-Aignan, France.
authors.forename: L
authors.initials: L
authors.lastname: Brachais
authors.forename: D
authors.initials: D
authors.lastname: Davoust
authors.forename: G
authors.initials: G
authors.lastname: Molle
mesh_terms: D000408:Alamethicin / Q000031:analogs & derivatives* / Q000138:chemical synthesis / Q000737:chemistry* / Q000494:pharmacology; D000595:Amino Acid Sequence; D002942:Circular Dichroism; D007473:Ion Channels / Q000187:drug effects*; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D012997:Solvents / Q000494:pharmacology; D017550:Spectroscopy, Fourier Transform Infrared
chemical_list: D007473:Ion Channels; D012997:Solvents; D000408:Alamethicin