title: Relationships between rfb gene clusters required for biosynthesis of identical D-galactose-containing O antigens in Klebsiella pneumoniae serotype O1 and Serratia marcescens serotype O16.
abstract: The lipopolysaccharide O antigens of Klebsiella pneumoniae serotype O1 and Serratia marcescens serotype O16 both contain a repeating unit disaccharide of [-->3)-beta-D-Galf-(1-->3)-alpha-D-Galp-(1-->]; the resulting polymer is known as D-galactan I. In K. pneumoniae serotype O1, the genes responsible for the synthesis of D-galactan I are found in the rfb gene cluster (rfbKpO1). We report here the cloning and analysis of the rfb cluster from S. marcescens serotype O16 (rfbSmO16). This is the first rfb gene cluster examined for the genus Serratia. Synthesis of D-galactan I is an rfe-dependent process for both K. pneumoniae serotype O1 and S. marcescens serotype O16. Hybridization experiments with probes derived from each of the six rfbKpO1 genes indicate that the cloned rfbSmO16 cluster contains homologous genes arranged in the same order. However, the degree of homology at the nucleotide sequence level was sufficiently low that hybridization was detected only under low-stringency conditions. rfbABSmO16 genes were subcloned and shown to encode an ABC-2 (ATP-binding cassette) transporter which is functionally identical to the one encoded by the corresponding rfb genes from K. pneumoniae serotype O1. The amino acid sequences of the predicted RfbA and RfbB homologs showed identities of 75.7% (87.9% total similarity) and 78.0% (86.5% total similarity), respectively. The last gene of the rfbKpO1 cluster, rfbFKpO1, encodes a bifunctional galactosyltransferase which initiates the formation of D-galactan I. RfbFKpO1 and RfbFSmO16 are 57.6% identical (with 71.1% total similarity), and both show similarity with RfpB, the galactosyltransferase involved in the synthesis of Shigella dysenteriae type I O-polysaccharide. The G+C contents of the rfbAB genes from each organism are quite similar, and values are lower than those typical for the species. However, the G+C content of rfbFSmO16 (47.6%) was much higher than that of rfbFKpO1 (37.3%), despite the fact that the average for each species (52 to 60%) falls within the same range.
authors.affiliation: Canadian Bacterial Diseases Network, Department of Microbiology, University of Guelph, Ontario, Canada.
authors.forename: M
authors.initials: M
authors.lastname: Szabo
authors.forename: D
authors.initials: D
authors.lastname: Bronner
authors.forename: C
authors.initials: C
authors.lastname: Whitfield
mesh_terms: D018528:ATP-Binding Cassette Transporters / Q000378:metabolism; D000595:Amino Acid Sequence; D000942:Antigens, Bacterial / Q000096:biosynthesis* / Q000737:chemistry / Q000235:genetics / Q000276:immunology; D001482:Base Composition; D001483:Base Sequence; D001692:Biological Transport; D002240:Carbohydrate Sequence; D003001:Cloning, Molecular; D004755:Enterobacteriaceae / Q000145:classification / Q000235:genetics* / Q000276:immunology; D005685:Galactans / Q000096:biosynthesis* / Q000737:chemistry / Q000235:genetics / Q000276:immunology; D005690:Galactose / Q000032:analysis / Q000235:genetics / Q000276:immunology; D005798:Genes, Bacterial / Q000235:genetics*; D007711:Klebsiella pneumoniae / Q000145:classification / Q000235:genetics / Q000276:immunology; D008070:Lipopolysaccharides / Q000737:chemistry; D008969:Molecular Sequence Data; D005810:Multigene Family / Q000235:genetics*; D009693:Nucleic Acid Hybridization; D019081:O Antigens; D011135:Polysaccharides, Bacterial / Q000096:biosynthesis* / Q000737:chemistry / Q000235:genetics / Q000276:immunology; D017386:Sequence Homology, Amino Acid; D012703:Serotyping; D012706:Serratia marcescens / Q000145:classification / Q000235:genetics / Q000276:immunology
chemical_list: D018528:ATP-Binding Cassette Transporters; D000942:Antigens, Bacterial; D005685:Galactans; D008070:Lipopolysaccharides; D019081:O Antigens; D011135:Polysaccharides, Bacterial; D005690:Galactose