title: Abnormal retention of intron 9 in CD44 gene transcripts in human gastrointestinal tumors.
abstract: We have recently identified a new exon of the CD44 gene and demonstrated abnormal retention of a noncoding section, intron 9, in mRNA from bladder carcinomas. To analyze this further, the present study examined CD44 gene expression in cell lines from 14 esophageal, 3 colonic, and 4 breast carcinomas and in fresh samples from 20 colorectal carcinomas and corresponding normal colonic mucosa, using reverse transcriptase followed by the polymerase chain reaction (RT-PCR). This confirmed that there was abnormal assembly of several exons of the gene in cell lines and in tumor tissues from these organs. However, the most striking new finding was that intron 9 was present in RNA from 11 esophageal, 3 colon, and 1 breast carcinoma cell line, respectively. This was confirmed by RNase and DNase digestion analysis. Moreover, it was detected both in nuclear and cytoplasmic mRNA fractions, indicating that abnormal splicing of pre-mRNA occurs in cancer cells. The abnormal retention of intron 9 in CD44 gene transcripts was also demonstrated in tumor tissues from 16 (80%) of 20 patients with colon carcinoma, but there was no correlation with Dukes' stage. The biological significance of these observations is not yet understood. However, it is clear that, as with the abnormal expression pattern of CD44 variant exons, intron 9 retention is a good-candidate molecular diagnostic tool for colorectal carcinomas.
authors.affiliation: Nuffield Department of Pathology, University of Oxford, John Radcliffe Hospital, Headington, United Kingdom.
authors.forename: K
authors.initials: K
authors.lastname: Yoshida
authors.forename: J
authors.initials: J
authors.lastname: Bolodeoku
authors.forename: T
authors.initials: T
authors.lastname: Sugino
authors.forename: S
authors.initials: S
authors.lastname: Goodison
authors.forename: Y
authors.initials: Y
authors.lastname: Matsumura
authors.forename: B F
authors.initials: BF
authors.lastname: Warren
authors.forename: T
authors.initials: T
authors.lastname: Toge
authors.forename: E
authors.initials: E
authors.lastname: Tahara
authors.forename: D
authors.initials: D
authors.lastname: Tarin
mesh_terms: D001483:Base Sequence; D001943:Breast Neoplasms / Q000235:genetics; D002352:Carrier Proteins / Q000235:genetics*; D015179:Colorectal Neoplasms / Q000235:genetics; D005770:Gastrointestinal Neoplasms / Q000235:genetics*; D006801:Humans; D018960:Hyaluronan Receptors; D007438:Introns; D008969:Molecular Sequence Data; D012333:RNA, Messenger / Q000032:analysis*; D011956:Receptors, Cell Surface / Q000235:genetics*; D016201:Receptors, Lymphocyte Homing / Q000235:genetics*; D014407:Tumor Cells, Cultured
chemical_list: D002352:Carrier Proteins; D018960:Hyaluronan Receptors; D012333:RNA, Messenger; D011956:Receptors, Cell Surface; D016201:Receptors, Lymphocyte Homing