title: Solvent-derived protons in catalysis by brewers' yeast pyruvate decarboxylase.
abstract: Catalysis of proton transfer to thiamin diphosphate (TDP) and 2-(1-hydroxyethyl)thiamin diphosphate (HETDP) by pyruvate decarboxylase isozymes (PDC; EC 4.1.1.1) from Saccharomyces carlsbergensis was investigated by determining the solvent discrimination tritium isotope effect, (kH/kT)disc, on the reaction of pyruvate to form acetaldehyde in the presence of the nonsubstrate allosteric effector pyruvamide. The fractionation factors for TDP C(2)-L (phi C(2) = 0.98 +/- 0.06) and HETDP C(alpha)-L (phi C(alpha) = 1.01 +/- 0.07) (L = H or D) do not contribute significantly to observed enzymic isotopic discrimination. The value of (kH/kT)disc = 1.0 for reprotonation of TDP C(2)-L under single-turnover conditions ([E] > [S]) is consistent with C(2)-hydron transfer via a catalytic group (phi = 1) equilibrated with solvent. [1-L]Acetaldehyde formation under transient steady-state ([E] < [S]) conditions shows solvent discrimination tritium isotope effects that increase over the range (kH/kT)disc = 0.39 (single turnover) to 0.86 (ten turnovers). The 2-fold increase in the value of (kH/kT)disc for the [1-L]acetaldehyde product under steady-state compared to single-turnover conditions is attributed to a fractionation factor of phi 1 = 0.88 +/- 0.06 for the residue(s) involved in C(alpha)-hydron transfer to form HETDP. This provides evidence that catalysis of acetaldehyde formation by PDC involves specific protonation of both HETDP C(alpha)-L and TDP C(2)-L (phi 2 = 1.0 +/- 0.1) and requires at least two catalytic groups. Values of phi < or = 1 for protonation of TDP C(2)-L and HETDP C(alpha)-L provide no evidence that the exocyclic 4'-amino or -imino group (phi > or = 1.2) provides significant intramolecular catalysis in the enzyme-bound coenzyme.
authors.affiliation: Department of Biochemistry, Johns Hopkins University, Baltimore, Maryland 21205-2179, USA.
authors.forename: T K
authors.initials: TK
authors.lastname: Harris
authors.forename: M W
authors.initials: MW
authors.lastname: Washabaugh
mesh_terms: D000079:Acetaldehyde / Q000378:metabolism; D002384:Catalysis; D007527:Isoenzymes / Q000378:metabolism*; D007700:Kinetics; D009994:Osmolar Concentration; D011522:Protons; D011767:Pyruvate Decarboxylase / Q000378:metabolism*; D012440:Saccharomyces / Q000201:enzymology*; D012997:Solvents
chemical_list: D007527:Isoenzymes; D011522:Protons; D012997:Solvents; D011767:Pyruvate Decarboxylase; D000079:Acetaldehyde