title: Biodegradation of cyclic and substituted linear oligomers of poly(3-hydroxybutyrate).
abstract: Cyclic oligo(3-hydroxybutyrate), oligo(3-HB), was synthesized and purified, resulting in oligolides that contained three to seven (R)-3-hydroxybutyrate units (triolides up to heptolides). In addition, linear 3-HB octamers obtained as either tert-butyl or methyl esters were substituted with different end groups at the hydroxy end. The hydroxy terminus was replaced by either a benzyloxy, trifluoroacetoxy, crotonyloxy (S)-3-hydroxybutyryloxy, or fluorenylmethylcarbonyloxy (FMOC) group. P(3-HB) hairpin loops occurred on the surface of certain regions of the polymer, especially of lamellar crystallites. Cyclic 3-HB oligomers provide a model system for these loops. It is assumed that they provide attachment points for the depolymerizing enzymes. All of the (R)-oligolides tested were degraded except the (R)-triolide. Triolides were not degraded, suggesting that enzymatic attack was prevented presumably by steric hindrance on the rigid ring system. Unsubstituted linear octamers were degraded. Biodegradation was prevented when the hydroxy terminus was protected by the FMOC group, but was not dependent on a free hydroxy terminal group; all other protecting groups did not prevent degradation. Substitution of the carboxy end of a methyl or tert-butyl ester group did not influence biodegradation.
authors.affiliation: Universitat Zurich, Institut fur Pflanzenbiologie, Switzerland.
authors.forename: H
authors.initials: H
authors.lastname: Brandl
authors.forename: B
authors.initials: B
authors.lastname: Aeberli
authors.forename: R
authors.initials: R
authors.lastname: Bachofen
authors.forename: I
authors.initials: I
authors.lastname: Schwegler
authors.forename: H M
authors.initials: HM
authors.lastname: Muller
authors.forename: M H
authors.initials: MH
authors.lastname: Burger
authors.forename: T
authors.initials: T
authors.lastname: Hoffmann
authors.forename: U D
authors.initials: UD
authors.lastname: Lengweiler
authors.forename: D
authors.initials: D
authors.lastname: Seebach
mesh_terms: D001673:Biodegradation, Environmental; D002265:Carboxylic Ester Hydrolases / Q000302:isolation & purification / Q000378:metabolism; D006088:Gram-Negative Aerobic Bacteria / Q000201:enzymology; D006885:Hydroxybutyrates / Q000138:chemical synthesis / Q000302:isolation & purification / Q000378:metabolism*; D011091:Polyesters / Q000138:chemical synthesis / Q000302:isolation & purification / Q000378:metabolism*; D012988:Soil Microbiology; D014871:Water Microbiology; D000094122:Polyhydroxybutyrates
chemical_list: D002265:Carboxylic Ester Hydrolases; D006885:Hydroxybutyrates; D011091:Polyesters; C003182:poly-beta-hydroxybutyrate; D000094122:Polyhydroxybutyrates; C022417:poly-beta-hydroxybutyrate depolymerase