Lysine side-chain dynamics derived from 13C-multiplet NMR relaxation studies on di- and tripeptides.
13C NMR relaxation data have been used to determine dipolar auto- and cross-correlation times for the di- and tripeptides GK, KG, and GKG, primarily to analyze lysine side-chain motional dynamics. In general, correlation times are largest for backbone positions and decrease on going through the lysine side chain, consistent with the idea of increased mobility at C delta and C episilon methylenes. Correlation times, however, vary with the peptide ionization state. In the zwitterionic state of GK, for example, both auto- and cross-correlation times are at their maximum values, indicating reduced internal motions probably resulting from intramolecular electrostatic interactions. Modifying the charge state increases motional fluctuations. Activation energies determined from the temperature dependence of CH rotational autocorrelation times at neutral pH are approximately equal for glycine and lysine C alpha and lysine C beta and C gamma positions (4.1 +/- 0.2 to 4.5 +/- 0.2 kcal/mol) and tend to decrease slightly for lysine C delta and C epsilon (3.8 +/- 0.2 to 4.3 +/- 0.2 kcal/mol). The sign of lysine side-chain cross-correlations could not be explained by using any available rotational model, including one parameterized for multiple internally restricted rotations and anisotropic overall tumbling. Molecular and stochastic dynamics calculations were performed to obtain insight into correlated internal rotations and coupled overall tumbling and internal motions. Relatively strong correlations were found for i,i+1 backbone and lysine side-chain internal bond rotations. Stochastic dynamics calculations were more successful at explaining experimentally observed correlation times. In the fully charged state, a preferred conformation was detected with an all-trans lysine side chain.
Mikhailov
D
D
Department of Biochemistry, University of Minnesota Health Sciences Center, Minneapolis 55455, USA.
Daragan
V A
VA
Mayo
K H
KH
D000595:Amino Acid Sequence; D002247:Carbon Isotopes; D003198:Computer Simulation; D004151:Dipeptides / Q000737:chemistry*; D005998:Glycine / Q000737:chemistry; D008239:Lysine / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D015394:Molecular Structure; D009842:Oligopeptides / Q000737:chemistry*; D013269:Stochastic Processes; D013816:Thermodynamics
D002247:Carbon Isotopes; D004151:Dipeptides; D009842:Oligopeptides; D008239:Lysine; D005998:Glycine