title: RNA signals for translation frameshift: influence of stem size and slippery sequence.
abstract: The pol gene of HIV-1 is expressed as a fusion protein with the upstream gag gene product after -1 ribosomal frameshifting. To get insights into the sequence requirements for the slippery heptanucleotide, generally present at the frameshift junction, and the downstream stem-loop structure, we prepared, starting from the gag-pol boundary sequence of HIV-1, serial deletion and base substitution derivatives for both of these signals, and inserted them into the amino-terminal proximal region of the luciferase gene, but downstream of the initiation codon, in out-of-frame fashion. The results of in vitro translation studies indicate that the stem-loop is not essential even if its size influences the efficiency of ribosomal frameshifting, and that the optimum repetition number of a single nucleotide within the slippery sequence exists for efficient ribosomal frameshifting.
authors.affiliation: Banyu Tsukuba Research Institute, Merck Research Laboratories, Japan.
authors.forename: A
authors.initials: A
authors.lastname: Honda
authors.forename: T
authors.initials: T
authors.lastname: Nakamura
authors.forename: S
authors.initials: S
authors.lastname: Nishimura
mesh_terms: D001483:Base Sequence; D003062:Codon; D015750:Genes, gag; D015751:Genes, pol; D015497:HIV-1 / Q000235:genetics*; D008156:Luciferases / Q000235:genetics; D008969:Molecular Sequence Data; D008979:Moloney murine leukemia virus / Q000235:genetics; D014176:Protein Biosynthesis; D012367:RNA, Viral / Q000737:chemistry*; D011993:Recombinant Fusion Proteins / Q000235:genetics
chemical_list: D003062:Codon; D012367:RNA, Viral; D011993:Recombinant Fusion Proteins; D008156:Luciferases