title: The molecular phylogeny of five eastern north Pacific octopus species.
abstract: The DNA sequence of a 612-nucleotide fragment of the mitochondrial cytochrome oxidase subunit III gene from five Octopus species has been determined. The COIII gene in these species shows an extreme bias against G in the DNA sense strand with a moderately low C composition. The bias against G and C severely restricts the codon usage in Octopus COIII genes. The aligned DNA sequences were subjected to distance, maximum-likelihood, and parsimony analyses to ascertain the phylogenetic relationship of the species. The results of all of the analyses were concordant. The analyses indicate that O. bimaculoides and O. bimaculatus are the least diverged of the species and fall into a separate clade from O. dolfleini and O. californicus, which are also closely related. O. rubescens is about equally removed from the other species, but parsimony, distance, maximum-likelihood, and logdet analyses suggest that it is more closely aligned with the O. bimaculoides/O. bimaculatus lineage.
authors.affiliation: Institute of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
authors.forename: I A
authors.initials: IA
authors.lastname: Barriga Sosa
authors.forename: K
authors.initials: K
authors.lastname: Beckenbach
authors.forename: B
authors.initials: B
authors.lastname: Hartwick
authors.forename: M J
authors.initials: MJ
authors.lastname: Smith
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D003062:Codon; D017931:DNA Primers; D003576:Electron Transport Complex IV / Q000737:chemistry / Q000235:genetics*; D016013:Likelihood Functions; D008969:Molecular Sequence Data; D049831:Octopodiformes / Q000235:genetics*; D010802:Phylogeny; D017386:Sequence Homology, Amino Acid; D012689:Sequence Homology, Nucleic Acid
chemical_list: D003062:Codon; D017931:DNA Primers; D003576:Electron Transport Complex IV