title: Photoaffinity labeling of rhodopsin and bacteriorhodopsin.
abstract: Photoaffinity labeling with bovine rhodopsin using a retinal with a fixed 11-cis-ene cross-linked exclusively to Trp-265/Leu-266 in helix F, showing that the beta-ionone C-3 is close to helix F. Moreover, since these labeled amino acids are in the middle of helix F, while the Schiff-base linkage to Lys-296 at the other terminus of the chromophore is also in the middle of helix G, the chromophore lies horizontally near the center of the lipid bilayer. In bacteriorhodopsin, photoaffinity studies using a retinal with a C-10 tritiated phenylazide appended through a 13 A spacer cross-linked to Arg-175/Asn-176 on the cytoplasmic side of helix F; this indicates that 9-Me points toward the extracellular space. This result agrees with our earlier studies with 9-sulfate analogs but is opposite to that deduced by biophysical measurements.
authors.affiliation: Department of Chemistry, Columbia University, New York, NY 10027, USA.
authors.forename: K
authors.initials: K
authors.lastname: Nakanishi
authors.forename: H
authors.initials: H
authors.lastname: Zhang
authors.forename: K A
authors.initials: KA
authors.lastname: Lerro
authors.forename: S
authors.initials: S
authors.lastname: Takekuma
authors.forename: T
authors.initials: T
authors.lastname: Yamamoto
authors.forename: T H
authors.initials: TH
authors.lastname: Lien
authors.forename: L
authors.initials: L
authors.lastname: Sastry
authors.forename: D J
authors.initials: DJ
authors.lastname: Baek
authors.forename: C
authors.initials: C
authors.lastname: Moquin-Pattey
authors.forename: M F
authors.initials: MF
authors.lastname: Boehm
mesh_terms: D000345:Affinity Labels; D000595:Amino Acid Sequence; D000818:Animals; D001436:Bacteriorhodopsins / Q000737:chemistry* / Q000378:metabolism; D003432:Cross-Linking Reagents; D007930:Leucine; D008051:Lipid Bilayers; D008961:Models, Structural; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D012243:Rhodopsin / Q000737:chemistry* / Q000378:metabolism; D012545:Schiff Bases; D014364:Tryptophan
chemical_list: D000345:Affinity Labels; D003432:Cross-Linking Reagents; D008051:Lipid Bilayers; D012545:Schiff Bases; D001436:Bacteriorhodopsins; D014364:Tryptophan; D012243:Rhodopsin; D007930:Leucine