title: HLA -A, -B, -DR haplotype frequencies in France--implications for recruitment of potential bone marrow donors.
abstract: We have undertaken a study of the haplotypes among French potential bone marrow donors in order to define the geographical regions of France with the maximum of polymorphism and also to develop a strategy for optimal donor recruitment. A maximum likelihood estimator was used to calculate haplotype frequencies and their support limits for each region and for the whole of France. The observed differences between the regions were statistically significant. For each region, the minimum number of haplotypes necessary to explain 50% of the total frequency was calculated and compared with the equivalent values, and confidence intervals, obtained by repeated random samplings from the overall file. This approach shows that some regions (e.g., Provence) appear to be richer in terms of the numbers of haplotypes observed, and others (e.g., Bretagne) poorer. In the latter case, however, the frequencies of the most common haplotypes are greater. The haplotype frequencies of the whole sample were used to calculate the probability of finding a match for the next potential recipient for given sizes of the donor file, assuming random selection of donors. They were also used to calculate expected numbers of the major phenotypes, assuming Hardy-Weinberg equilibrium, and these were compared with those observed in the real data file. In this way, a large number of under-represented and nonrepresented phenotypes were identified. For each of these phenotypes, the most probable haplotypes and the regions in which these have the greatest frequencies have been identified. A search for donors with such particular phenotypes would be much more fruitful if directed towards these regions.
authors.affiliation: Centre d'Immunopathologie et de Génétique Humaine UPR 8291, CHU Purpan, Toulouse, France.
authors.forename: C
authors.initials: C
authors.lastname: Lonjou
authors.forename: J
authors.initials: J
authors.lastname: Clayton
authors.forename: A
authors.initials: A
authors.lastname: Cambon-Thomsen
authors.forename: C
authors.initials: C
authors.lastname: Raffoux
mesh_terms: D000483:Alleles; D016026:Bone Marrow Transplantation / Q000379:methods*; D005602:France; D005787:Gene Frequency; D005843:Geography; D015234:HLA-A Antigens / Q000235:genetics*; D015235:HLA-B Antigens / Q000235:genetics*; D006684:HLA-DR Antigens / Q000235:genetics*; D006239:Haplotypes; D006801:Humans; D014019:Tissue Donors
chemical_list: D015234:HLA-A Antigens; D015235:HLA-B Antigens; D006684:HLA-DR Antigens