title: In Vibrio cholerae serogroup O1, rfaD is closely linked to the rfb operon.
abstract: The rfaD gene of Escherichia coli encodes ADP-L-glycero-D-mannoheptose-6- epimerase, an enzyme required for the biosynthesis of the lipopolysaccharide (LPS) precursor ADP-L-glycero-D- mannoheptose, associated with production of the core oligosaccharide. We have identified an rfaD homologue in Vibrio cholerae O1. This gene maps adjacent to the rfb region encoding O-antigen biosynthesis, but is transcribed divergently. The complete nucleotide sequence of rfaD and the flanking DNA has been determined, and rfaD would appear to be the only gene homologous to known LPS core biosynthesis genes in this region. Comparison with the E. coli rfaD shows many similar structural features such as the ADP-binding beta alpha beta fold at the N terminus, as well as a high degree of homology of both the nucleotide and amino-acid sequences. Based on homology, rfaD of V. cholerae may be transcribed using both sigma 70- and sigma 54-dependent promoters.
authors.affiliation: Department of Microbiology and Immunology, University of Adelaide, Australia.
authors.forename: U H
authors.initials: UH
authors.lastname: Stroeher
authors.forename: L E
authors.initials: LE
authors.lastname: Karageorgos
authors.forename: R
authors.initials: R
authors.lastname: Morona
authors.forename: P A
authors.initials: PA
authors.lastname: Manning
mesh_terms: D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000235:genetics*; D001483:Base Sequence; D002238:Carbohydrate Epimerases / Q000235:genetics*; D008969:Molecular Sequence Data; D009154:Mutation; D016366:Open Reading Frames; D009876:Operon; D015183:Restriction Mapping; D017386:Sequence Homology, Amino Acid; D012703:Serotyping; D014734:Vibrio cholerae / Q000145:classification / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; C037213:ADP-L-glycero-D-mannoheptose-6-epimerase; D002238:Carbohydrate Epimerases