title: Conformational preferences of oligopeptides rich in alpha-aminoisobutyric acid. III. Design, synthesis and hydrogen bonding in 3(10)-helices.
abstract: Two sterically constrained peptides [iBoc-Aib-Aib-Aib-DkNap-Leu-Qx-Ala-Aib-Aib-Fl, (Dk4Qx6[7/9]) and iBoc-Aib-Aib-Aib-DkNap-Leu-Aib-Ala-Aib-Aib-Fl, (Dk4[7/9])] containing alpha-aminoisobutyric acid (Aib) and Aib-class amino acids in conjunction with selected mono-alpha-alkyl amino acids were synthesized by an optimized TBTU/HOBt procedure. The use of Aib-class amino acids (e.g. DkNap and Qx), defined and discussed here, gives rise to the same overwhelmingly 3(10)-helical backbone conformation as that provided by simpler Aib-rich peptides and homopeptides. The synthetic alpha,alpha-dialkylamino acids (DkNap, Qx) are aromatic homologues of the known alicyclic variants of Aib, the Ac5c and Ac6c amino acids. Two new organic solubilizing groups for peptides, iBoc and 2-methoxyethylamine, are introduced. The 1H nuclear magnetic resonance analyses of the Dk4[7/9] and Dk4Qx6[7/9] peptides demonstrate the unambiguous 3(10)-helical hydrogen bonding pattern of these peptides, confirming the design objective of these sequence patterns containing greater than 50% Aib and Aib-class composition.
authors.affiliation: Department of Chemistry, Baker Laboratory, Cornell University, Ithaca, New York, USA.
authors.forename: V A
authors.initials: VA
authors.lastname: Bindra
authors.forename: A
authors.initials: A
authors.lastname: Kuki
mesh_terms: D000595:Amino Acid Sequence; D000613:Aminobutyrates / Q000737:chemistry*; D006860:Hydrogen Bonding; D008969:Molecular Sequence Data; D009842:Oligopeptides / Q000138:chemical synthesis / Q000737:chemistry*; D011487:Protein Conformation
chemical_list: D000613:Aminobutyrates; D009842:Oligopeptides; C012223:alpha-aminobutyric acid