title: Nucleotide and deduced amino acid sequence of the gene for a novel protein with a possible regulatory function encoded in the beta operon of Staphylococcus aureus.
abstract: Although considerable homology exists between the translation products of the rplL, rpoB and rpoC genes of the beta operons of the Gram-negative organism Escherichia coli and the Gram-positive Staphylococcus aureus the region between the rplL and rpoB genes is quite different in the two bacterial species. In E. coli the 324 bp has three centres of dyad symmetry in the first half of the sequence and multiple nonsense codons in all three reading frames. By contrast, the corresponding region in S. aureus consists of 1000 bp capable of forming a similar arrangement of stem-loop structures but with an open reading frame, sited 177 bp downstream of the end of rplL and 217 bp upstream of the beginning of the rpoB gene, with consensus initiation and termination signals, which if translated would generate a 22,665 Da protein with 202 amino acids. In view of the inability to find any significant homology with other proteins in the data bank and because the evidence suggests, as in E. coli, that the rplL-rpoB intergenic sequence is involved in regulation it is proposed that the expression product of orf202 may be a further element of control in the S. aureus beta operon.
authors.affiliation: Department of Biochemistry, Nottingham University Medical School, Queen's Medical Centre, UK.
authors.forename: M A
authors.initials: MA
authors.lastname: Aboshkiwa
authors.forename: G C
authors.initials: GC
authors.lastname: Rowland
authors.forename: G
authors.initials: G
authors.lastname: Coleman
mesh_terms: D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000235:genetics*; D001483:Base Sequence; D000458:Cyanobacteria / Q000235:genetics; D012321:DNA-Directed RNA Polymerases / Q000235:genetics*; D004926:Escherichia coli / Q000235:genetics; D005798:Genes, Bacterial; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D016366:Open Reading Frames; D009876:Operon; D016354:Rhodobacter capsulatus / Q000235:genetics; D012269:Ribosomal Proteins / Q000235:genetics*; D016415:Sequence Alignment; D013045:Species Specificity; D013211:Staphylococcus aureus / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; C093195:Orf202 protein, Staphylococcus aureus; D012269:Ribosomal Proteins; C016700:ribosomal protein L7-L12; D012321:DNA-Directed RNA Polymerases