title: Induction of base damage in DNA solutions by ultrasonic cavitation.
abstract: Ultrasound can damage macromolecules by the mechanical (shearing) and sonochemical (free radical generating) action of ultrasonic cavitation. Attributing macromolecular damage to either direct mechanical stress or to indirect mechanisms involving free radicals or other sonochemicals is a challenging problem. DNA damage induced by ultrasound was evaluated by measuring the formation of purine and pyrimidine products using combined gas chromatography-mass spectrometry with selected ion monitoring. Samples of DNA were prepared in 10 mmol dm-3 phosphate buffered saline (pH 7.4) and saturated with a mixture of argon:oxygen (3:1). Continuous 2.17 MHz ultrasound exposures at 0.82 mPa spatial peak negative pressure amplitude were performed in a 60 rpm rotating tube exposure system. Hydrogen peroxide yields were measured after each exposure to quantify the cavitation activity and ranged up to 350 mumol dm-3 for 1-h exposures. Purine and pyrimidine products identified were those typically observed following exposure of DNA to hydroxyl radical-generating systems, such as ionizing radiation, hypoxanthine/xanthine oxidase, or hydrogen peroxide in the presence of transition metal ions. The yields of these products were directly correlated with cavitation activity as measured by residual hydrogen peroxide concentrations. The yields of DNA products increased in the following order: thymine glycol approximately cytosine glycol > 8-oxoAde > FAPyAde approximately 5-HMU approximately 5,6-diOHCyt > FAPyGua. Unexpectedly, 8-oxoguanine did not exhibit a dose-dependent increase above background levels, and this observation is inconsistent with processes involving metal ion-dependent formation of hydroxyl radicals from hydrogen peroxide. In addition, the product yields were far too large to result from the residual hydrogen peroxide. Thus, ultrasonic cavitation appears to have a mode of action distinct from either ionizing radiation or formation of hydroxyl radicals via Fenton-like reaction with transition metals.
authors.affiliation: Biology and Chemistry Department, Battelle, Pacific Northwest Laboratory, Richland, WA 99352, USA.
authors.forename: A F
authors.initials: AF
authors.lastname: Fuciarelli
authors.forename: E C
authors.initials: EC
authors.lastname: Sisk
authors.forename: R M
authors.initials: RM
authors.lastname: Thomas
authors.forename: D L
authors.initials: DL
authors.lastname: Miller
mesh_terms: D000225:Adenine / Q000031:analogs & derivatives / Q000737:chemistry; D000818:Animals; D002417:Cattle; D003596:Cytosine / Q000031:analogs & derivatives / Q000737:chemistry; D004249:DNA Damage; D005609:Free Radicals; D008401:Gas Chromatography-Mass Spectrometry; D006861:Hydrogen Peroxide / Q000032:analysis; D017665:Hydroxyl Radical / Q000737:chemistry; D011687:Purines / Q000032:analysis / Q000737:chemistry; D011743:Pyrimidines / Q000032:analysis / Q000737:chemistry; D013941:Thymine / Q000031:analogs & derivatives / Q000737:chemistry; D014465:Ultrasonics
chemical_list: D005609:Free Radicals; D011687:Purines; D011743:Pyrimidines; C049744:cytosine glycol; C002992:8-hydroxyadenine; C029389:thymine glycol; D017665:Hydroxyl Radical; C039544:4,6-diamino-5-N-formamidopyrimidine; D003596:Cytosine; D006861:Hydrogen Peroxide; D000225:Adenine; D013941:Thymine