title: Protected P-element termini suggest a role for inverted-repeat-binding protein in transposase-induced gap repair in Drosophila melanogaster.
abstract: P-element transposition is thought to occur by a cut-and paste mechanism that generates a double-strand break at the donor site, the repair of which can lead to internally deleted elements. We have generated a series of both phenotypically stronger and weaker allelic derivatives of vg21, a vestigial mutant caused by a P-element insertion in the 5' region of the gene. Virtually all of the new alleles arose by internal deletion of the parental element in vg21, and we have characterized a number of these internally deleted P elements. Depending upon the selection scheme used, we see a very different spectrum of amount and source of P-element sequences in the resultant derivatives. Strikingly, most of the breakpoints occur within the inverted-repeats such that the last 15-17 bp of the termini are retained. This sequence is known to bind the inverted-repeat-binding protein (IRBP). We propose that the IRBP may act to preserve the P-element ends when transposition produces a double-strand gap. This allows the terminus to serve as a template upon which DNA synthesis can act to repair the gap. Filler sequences found at the breakpoints of the internally deleted P elements resemble short stretches, often in tandem arrays, of these terminal sequences. The structure of the filler sequences suggests replication slippage may occur during the process of gap repair.
authors.affiliation: Department of Genetics, University of Alberta, Edmonton, Canada.
authors.forename: B E
authors.initials: BE
authors.lastname: Staveley
authors.forename: T R
authors.initials: TR
authors.lastname: Heslip
authors.forename: R B
authors.initials: RB
authors.lastname: Hodgetts
authors.forename: J B
authors.initials: JB
authors.lastname: Bell
mesh_terms: D000483:Alleles; D000818:Animals; D001483:Base Sequence; D004260:DNA Repair / Q000235:genetics*; D004251:DNA Transposable Elements; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism*; D029721:Drosophila Proteins; D004331:Drosophila melanogaster / Q000235:genetics*; D017353:Gene Deletion; D008969:Molecular Sequence Data; D009687:Nuclear Proteins; D009713:Nucleotidyltransferases / Q000235:genetics* / Q000378:metabolism; D010641:Phenotype; D012091:Repetitive Sequences, Nucleic Acid / Q000235:genetics*; D017421:Sequence Analysis; D014158:Transcription, Genetic; D019895:Transposases
chemical_list: D004251:DNA Transposable Elements; D004268:DNA-Binding Proteins; D029721:Drosophila Proteins; C086846:Irbp protein, Drosophila; D009687:Nuclear Proteins; D009713:Nucleotidyltransferases; D019895:Transposases