title: Nucleotide sequence of a pectate lyase structural gene, pel1 of Erwinia carotovora subsp. carotovora strain 71 and structural relationship of pel1 with other pel genes of Erwinia species.
abstract: Of the various exoproteins secreted by Erwinia carotovora subsp. carotovora strain 71, Pel1 is the major pectate lyase species with tissue macerating activity. Nucleotide sequencing of a 2.2-kb pel1+ DNA segment revealed a 1,122 base pair open reading frame which could encode pre-Pel1 of 374 amino acid residues. A signal peptide of 22 amino acid residues is present within the NH2-terminal region of pre-Pel1. Transcription of pel1 was initiated at the guanine residue 111 base pairs upstream of the start codon. Consensus sequences for the binding of KdgR, a negative regulatory factor known to control some of the E. chrysanthemi pectinases, flank the promoter of pel1. Although pel1 belongs to the pelBC family, it is more closely related to the pel genes of E. carotovora than to the pelBC genes of E. chrysanthemi.
authors.affiliation: Department of Plant Pathology, University of Missouri-Columbia 65211.
authors.forename: A
authors.initials: A
authors.lastname: Chatterjee
authors.forename: Y
authors.initials: Y
authors.lastname: Liu
authors.forename: A K
authors.initials: AK
authors.lastname: Chatterjee
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D004269:DNA, Bacterial / Q000235:genetics; D016974:Dickeya chrysanthemi / Q000201:enzymology / Q000235:genetics; D005798:Genes, Bacterial; D008969:Molecular Sequence Data; D016973:Pectobacterium carotovorum / Q000201:enzymology* / Q000235:genetics*; D011133:Polysaccharide-Lyases / Q000235:genetics*; D021382:Protein Sorting Signals / Q000235:genetics; D017386:Sequence Homology, Amino Acid; D013045:Species Specificity
chemical_list: D004269:DNA, Bacterial; D021382:Protein Sorting Signals; D011133:Polysaccharide-Lyases; C023911:pectate lyase