Dynamic and elastic properties of F-actin: a normal-modes analysis.
We examine the dynamic, elastic, and mechanical consequences of the proposed atomic models of F-actin, using a normal mode analysis. This initial analysis is done in vacuo and assumes that all monomers are rigid and equivalent. Our computation proceeds from the atomic level and, relying on a single fitting parameter, reproduces various experimental results, including persistence lengths, elastic moduli, and contact energies. The computations reveal modes of motion characteristic to all polymers, such as longitudinal pressure waves, torsional waves, and bending, as well as motions unique to F-actin. Motions typical to actin include a "groove-swinging" motion of the two long-pitch helices, as well as an axial slipping motion of the two strands. We prepare snapshots of thermally activated filaments and quantify the accumulation of azimuthal angular "disorder," variations in cross-over lengths, and various other fluctuations. We find that the orientation of a small number of select residues has a surprisingly large effect on the filament flexibility and elasticity characteristics.
ben-Avraham
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Department of Physics, Clarkson University, Potsdam, New York 13699-5820, USA.
Tirion
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D000199:Actins / Q000737:chemistry*; D000465:Algorithms; D001696:Biomechanical Phenomena; D055592:Biophysical Phenomena; D001703:Biophysics; D004548:Elasticity; D046911:Macromolecular Substances; D008956:Models, Chemical; D015394:Molecular Structure; D009038:Motion; D011487:Protein Conformation; D013816:Thermodynamics
D000199:Actins; D046911:Macromolecular Substances