Conformational structure of bombesin as studied by vibrational and circular dichroism spectroscopy.
Raman and Fourier transform infrared (FTIR) spectroscopies and circular dichroism (CD) have been applied to investigate the secondary structure of bombesin in the solid state and in phosphate buffer solution (pH 3.8). At concentrations around 10(-5) M, circular dichroism reveals that bombesin exists as an irregular or disordered conformation. However, the secondary structure of the peptide appears to be a mixture of disordered structure and intermolecular beta-sheets in 0.01 M sodium phosphate buffer when the peptide concentrations are higher than around 6.5 mM. The tendency of bombesin to form aggregated beta-sheet species seems to be originated mainly in the sequence of the residues 7-14, as supported by the Raman spectra and beta-sheet propensities (P beta) of the amino-acid residues. It is the hydrophobic force of this amino-acid sequence, and not a salt bridge effect, that is the factor responsible for the formation of peptide aggregates.
Carmona
P
P
Instituto de Optica (CSIC), Madrid, Spain.
Lasagabaster
A
A
Molina
M
M
D000595:Amino Acid Sequence; D001839:Bombesin / Q000737:chemistry*; D002942:Circular Dichroism; D008969:Molecular Sequence Data; D011487:Protein Conformation
D001839:Bombesin