title: Structure and properties of the bacteriochlorophyll binding site in peripheral light-harvesting complexes of purple bacteria.
abstract: In this paper, we have examined, using FT resonance Raman spectroscopy, the bacteriochlorophyll (BChl) binding sites in the peripheral light-harvesting complexes extracted from a number of purple bacterial strains. A comparison of interactions of the BChl molecules with their binding sites in these LH2 complexes, together with the primary sequences of the alpha and beta polypeptides, allows three amino acids to be proposed to be involved in the hydrogen bonding of the 9-keto carbonyl of one of the 850-nm-absorbing pair of BChl molecules. Specifically, we show that one keto carbonyl group, which is strongly hydrogen bonded in Rhodobacter sphaeroides LH2, is involved in much weaker interactions in the LH2 complexes from all the other species studied (i.e., Rhodobacter capsulatus, Rubrivivax gelatinosus, Rhodopseudomonas palustris, Rhodopseudomonas acidophila, and Rhodopseudomonas cryptolactis). This is correlated with the presence of three polar amino acids in the primary sequence of the alpha polypeptide of Rb. sphaeroides which are absent in the sequences from all the other bacteria and probably close to a chromophore. These three residues are a serine at position -4, a threonine at position +6 and another serine at position +17 (numbering relative to the conserved histidine, considered as position 0), in the alpha polypeptide of Rb. sphaeroides. Furthermore, the study of the interactions in natural B800-820 complexes shows that the two 2-acetyl groups of the 820-nm-absorbing BChl molecules are free from hydrogen-bonding interactions. In the light of previous site-selected mutagenesis studies, the lack of such hydrogen bonds seems to be a general phenomenon, associated with the 820-nm absorption of LH2 complexes, and suggests that hydrogen-bonding interactions have a precise molecular role in finely tuning the functional properties of these complexes.
authors: Section de Biophysique des Protéines et des Membranes, DBCM/CEA, Gif/Yvette, France.
authors: J N
authors: JN
authors: Sturgis
authors: V
authors: V
authors: Jirsakova
authors: F
authors: F
authors: Reiss-Husson
authors: R J
authors: RJ
authors: Cogdell
authors: B
authors: B
authors: Robert
mesh_terms: D000595:Amino Acid Sequence; D001429:Bacteriochlorophylls / Q000378:metabolism*; D001665:Binding Sites; D006860:Hydrogen Bonding; D045342:Light-Harvesting Protein Complexes; D008969:Molecular Sequence Data; D045322:Photosynthetic Reaction Center Complex Proteins / Q000737:chemistry / Q000378:metabolism*; D012242:Rhodobacter sphaeroides / Q000378:metabolism; D012244:Rhodospirillaceae / Q000378:metabolism; D013059:Spectrum Analysis, Raman
chemical_list: D001429:Bacteriochlorophylls; D045342:Light-Harvesting Protein Complexes; D045322:Photosynthetic Reaction Center Complex Proteins