PdbMotif--a tool for the automatic identification and display of motifs in protein structures.
A program PdbMotif, which automatically identifies protein motifs in a protein data bank file and generates a script file which can be read directly by the molecular rendering program RasMol, is described. PdbMotif accepts the standard PROSITE pattern syntax and will scan the PROSITE pattern database or a set of user defined patterns. Any motifs detected are automatically highlighted in the RasMol image.
Saqi
M A
MA
Department of Biomolecular Structure, Glaxo Group Research, Greenford, Middlesex, UK.
Sayle
R
R
D000465:Algorithms; D000595:Amino Acid Sequence; D003196:Computer Graphics; D016208:Databases, Factual; D008958:Models, Molecular; D015394:Molecular Structure; D010363:Pattern Recognition, Automated; D011506:Proteins / Q000737:chemistry*; D017421:Sequence Analysis; D012984:Software; D014584:User-Computer Interface
D011506:Proteins