The triple isotopic substitution method in small angle neutron scattering. Application to the study of the ternary complex EF-Tu.GTP.aminoacyl-tRNA.
The TIS (triple isotopic substitution) method in small angle neutron scattering was applied to determine the radius of gyration of polypeptide elongation factor Tu (EF-Tu) from E. coli associated with GDP and within the ternary complex EF-Tu.GTP.aminoacyl-tRNA. The results showed that, within errors of about 1 A, there is no change in the radius of gyration of the EF-Tu moiety upon ternary complex formation. Experiments were performed in H2O buffer, in which complex formation could be followed on an absolute scale because of the relatively large contrast of both protein and tRNA. The TIS method is based on the analysis of a scattering curve that is the difference between the scattering of two solutions containing appropriately deuterium labelled particles. A necessary condition for the application of the method is that the two solutions are identical in all respects except for the extent of deuterium label. The main properties of TIS that make it very useful for the study of complex particles in solution were confirmed by this study. These are the elimination of interparticle effects in the difference curve, the 'invisibility' of unlabelled parts of the particles and the independence of the difference scattering curve on the buffer 2H2O-H2O content. The last property is of particular interest for the study of interactions that may be influenced by 2H2O, since, contrary to classical contrast variation methods, TIS experiments can be performed in H2O buffer alone.
Serdyuk
I N
IN
Institute of Protein Research RAS, Moscow Region, Russian Federation.
Pavlov MYu
Rublevskaya
I N
IN
Zaccaï
G
G
Leberman
R
R
D006160:Guanosine Triphosphate / Q000737:chemistry*; D007554:Isotopes; D008968:Molecular Conformation; D009502:Neutrons; D010444:Peptide Elongation Factor Tu / Q000737:chemistry*; D012346:RNA, Transfer, Amino Acyl / Q000737:chemistry*; D012356:RNA, Transfer, Leu / Q000737:chemistry; D012360:RNA, Transfer, Phe / Q000737:chemistry; D012542:Scattering, Radiation; D014867:Water
D007554:Isotopes; D012346:RNA, Transfer, Amino Acyl; D012356:RNA, Transfer, Leu; D012360:RNA, Transfer, Phe; D014867:Water; D006160:Guanosine Triphosphate; D010444:Peptide Elongation Factor Tu