Complex pattern of alternative splicing in the normal uroporphyrinogen decarboxylase gene: implications for diagnosis of familial porphyria cutanea tarda.
We describe multiple alternative transcripts of uroporphyrinogen decarboxylase mRNA in normal individuals and patients with familial porphyria cutanea tarda. mRNA was reverse-transcribed, subjected to the polymerase chain reaction, and analyzed for nucleotide sequence. Seven different transcripts were characterized, and a cryptic splice acceptor site was identified in intron 1. In all mRNAs the exons abutted at previously defined exon boundaries. Characterization of the splice junctions in the genomic DNA showed that splice donor and acceptor sequences complied with the consensus sequences for these sites except for the splice acceptor sequences of exons 3 and 10. THese deviations were present in two normal individuals and one patient with familial porphyria cutanea tarda and were thus unable to explain the multiple aberrant uroporphyrinogen decarboxylase transcripts. We conclude that apparent deletions observed in transcripts derived from the uroporphyrinogen decarboxylase gene in patients with familial porphyria cutanea tarda should be interpreted with caution.
McManus
J F
JF
Department of Biochemistry, Royal Melbourne Hospital, Victoria, Australia.
Begley
C G
CG
Ratnaike
S
S
D017398:Alternative Splicing; D001483:Base Sequence; D004912:Erythrocytes / Q000201:enzymology; D005091:Exons; D006801:Humans; D007438:Introns; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D017119:Porphyria Cutanea Tarda / Q000175:diagnosis / Q000235:genetics*; D012333:RNA, Messenger / Q000032:analysis / Q000737:chemistry; D012016:Reference Values; D014575:Uroporphyrinogen Decarboxylase / Q000097:blood / Q000235:genetics*
D012333:RNA, Messenger; D014575:Uroporphyrinogen Decarboxylase