title: Enzyme IIBcellobiose of the phosphoenol-pyruvate-dependent phosphotransferase system of Escherichia coli: backbone assignment and secondary structure determined by three-dimensional NMR spectroscopy.
abstract: The assignment of backbone resonances and the secondary structure determination of the Cys 10 Ser mutant of enzyme IIBcellobiose of the Escherichia coli cellobiose-specific phosphoenol-pyruvate-dependent phosphotransferase system are presented. The backbone resonances were assigned using 4 triple resonance experiments, the HNCA and HN(CO)CA experiments, correlating backbone 1H, 15N, and 13C alpha resonances, and the HN(CA)CO and HNCO experiments, correlating backbone 1H,15N and 13CO resonances. Heteronuclear 1H-NOE 1H-15N single quantum coherence (15N-NOESY-HSQC) spectroscopy and heteronuclear 1H total correlation 1H-15N single quantum coherence (15N-TOCSY-HSQC) spectroscopy were used to resolve ambiguities arising from overlapping 13C alpha and 13CO frequencies and to check the assignments from the triple resonance experiments. This procedure, together with a 3-dimensional 1H alpha-13C alpha-13CO experiment (COCAH), yielded the assignment for all observed backbone resonances. The secondary structure was determined using information both from the deviation of observed 1H alpha and 13C alpha chemical shifts from their random coil values and 1H-NOE information from the 15N-NOESY-HSQC. These data show that enzyme IIBcellobiose consists of a 4-stranded parallel beta-sheet and 5 alpha-helices. In the wild-type enzyme IIBcellobiose, the catalytic residue appears to be located at the end of a beta-strand.
authors.affiliation: Groningen Biomolecular Science and Biotechnology Institute, University of Groningen, The Netherlands.
authors.forename: E
authors.initials: E
authors.lastname: Ab
authors.forename: G K
authors.initials: GK
authors.lastname: Schuurman-Wolters
authors.forename: M H
authors.initials: MH
authors.lastname: Saier
authors.forename: J
authors.initials: J
authors.lastname: Reizer
authors.forename: M
authors.initials: M
authors.lastname: Jacuinod
authors.forename: P
authors.initials: P
authors.lastname: Roepstorff
authors.forename: K
authors.initials: K
authors.lastname: Dijkstra
authors.forename: R M
authors.initials: RM
authors.lastname: Scheek
authors.forename: G T
authors.initials: GT
authors.lastname: Robillard
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D004926:Escherichia coli / Q000201:enzymology*; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D016296:Mutagenesis; D010731:Phosphoenolpyruvate Sugar Phosphotransferase System / Q000737:chemistry*; D017433:Protein Structure, Secondary
chemical_list: D010731:Phosphoenolpyruvate Sugar Phosphotransferase System; C087821:phosphoenolpyruvate-cellobiose phosphotransferase