Nucleotide sequence and structural features of the group III citrus viroids.
The nucleotide sequence and secondary structure of two representative variants from the Group III citrus viroids. CVd-IIIa (297 bases) and CVd-IIIb (294 bases) were determined. The variants are related to the apple scar skin viroid (ASSVd) family. Although smaller in size than any of the ASSVd-related viroids, the central conserved region as well as most of the terminal conserved region of ASSVd is retained. The rod-like structural configuration (characteristic of ASSVd) of the variants as predicted by minimum free energy analysis is presented.
Rakowski
A G
AG
Department of Plant Pathology, University of California, Riverside 92521.
Szychowski
J A
JA
Avena
Z S
ZS
Semancik
J S
JS
D001482:Base Composition; D001483:Base Sequence; D002957:Citrus / Q000821:virology*; D017124:Conserved Sequence; D005638:Fruit / Q000821:virology; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D016133:Polymerase Chain Reaction; D012367:RNA, Viral / Q000737:chemistry / Q000235:genetics*; D017422:Sequence Analysis, DNA; D017423:Sequence Analysis, RNA; D012689:Sequence Homology, Nucleic Acid; D014772:Viroids / Q000235:genetics*
D012367:RNA, Viral