Analysis of the nucleotide sequence of 48 kbp of the variola major virus strain India-1967 located on the right terminus of the conservative genome region.
Computer analysis of a variola major virus (VAR) genomic fragment bounded by the open reading frames (ORFs) D1R and A33L, which is 47,961 bp long, revealed 46 potential ORFs. The VAR proteins were compared to the analogous proteins of vaccinia virus strain Copenhagen. The subunits of DNA-dependent RNA polymerase, as well as the transcription factors, mRNA-capping enzymes, and proteins necessary for the virion morphogenesis proved to be highly conservative within orthopoxviruses. The most pronounced differences between the VAR genome fragment under study and the corresponding vaccinia virus fragment were revealed in the vicinity of the gene encoding the A-type inclusion bodies protein. Possible functions of the analysed viral proteins are discussed.
Shchelkunov
S N
SN
Institute of Molecular Biology, NPO Vector, Koltsovo, Novosibirsk region, Russia.
Resenchuk
S M
SM
Totmenin
A V
AV
Blinov
V M
VM
Sandakhchiev
L S
LS
D000595:Amino Acid Sequence; D001483:Base Sequence; D004279:DNA, Viral / Q000235:genetics*; D012321:DNA-Directed RNA Polymerases / Q000378:metabolism; D007426:Genes, Intracisternal A-Particle; D016679:Genome, Viral; D008969:Molecular Sequence Data; D009024:Morphogenesis; D016366:Open Reading Frames; D012315:RNA Caps / Q000378:metabolism; D016415:Sequence Alignment; D017385:Sequence Homology; D014157:Transcription Factors / Q000378:metabolism; D012901:Variola virus / Q000145:classification / Q000235:genetics* / Q000502:physiology; D014764:Viral Proteins / Q000378:metabolism; D014779:Virus Replication
D004279:DNA, Viral; D012315:RNA Caps; D014157:Transcription Factors; D014764:Viral Proteins; D012321:DNA-Directed RNA Polymerases