Structural studies on peptides corresponding to mutants of the major alpha-helix of barnase.
The structures of a family of peptides that contain variants of the major alpha-helix of barnase (residues 6-18) have been analyzed in solution by circular dichroism (CD) and 1H NMR at various concentrations of the helix-inducing cosolvent trifluoroethanol (TFE). The very low equilibrium constant (approximately 10(-2) for the formation of helix in water KH2O was estimated from titration of the helical ellipticity signal at 222 nm with [TFE] using the equation, KTFE = KH2O exp((m/RT) [TFE]/[H2O]), where KTFE is the equilibrium constant for the formation of helix in TFE/H2O and m is characteristic for each peptide but appears to be proportional to the lengths of related helices. NMR studies show that the peptide is mainly random coil in water, but that the helix is induced cooperatively by TFE and extends from residues 6 to 18 for wild-type peptide in 35% TFE. The mutant peptide Tyr-17-->Ala, however, has a helical region extending only for residues 9-15. Truncation of the helix upon mutation is also detected in the TFE titration procedure, which finds correspondingly lowered m-values upon mutation. This is is also supported by measurements of the pH dependence of KH2O, which is caused by the ionization of the C-cap residue, His-18, whose pKa is raised by the interaction of the protonated form with the helix dipole. Whereas there is an apparent charge/dipole interaction energy of 1.1 kcal mol-1 in the wild-type peptide, similar to that measured in the native protein, this drops dramatically upon mutations that disrupt the C-terminus of the helix. Mutation of Tyr-17-->Ala lowers KH2O only slightly, as do the other helix-destabilizing mutations. The combined results show that the helix-weakening effects of mutations act here primarily by shortening the length of the helix, with smaller effects on the equilibrium constants between helix and coil (KH2O).(ABSTRACT TRUNCATED AT 250 WORDS)
Kippen
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AD
Department of Chemistry, University of Cambridge, UK.
Arcus
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VL
Fersht
A R
AR
D000595:Amino Acid Sequence; D001426:Bacterial Proteins; D002942:Circular Dichroism; D006863:Hydrogen-Ion Concentration; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D009154:Mutation; D010446:Peptide Fragments / Q000737:chemistry; D017433:Protein Structure, Secondary; D012260:Ribonucleases / Q000737:chemistry* / Q000235:genetics; D013816:Thermodynamics; D014270:Trifluoroethanol; D014867:Water
D001426:Bacterial Proteins; D010446:Peptide Fragments; D014867:Water; D014270:Trifluoroethanol; D012260:Ribonucleases; C019760:Bacillus amyloliquefaciens ribonuclease