title: Cloning and characterization of an autonomous replication sequence from Coxiella burnetii.
abstract: A Coxiella burnetii chromosomal fragment capable of functioning as an origin for the replication of a kanamycin resistance (Kanr) plasmid was isolated by use of origin search methods utilizing an Escherichia coli host. The 5.8-kb fragment was subcloned into phagemid vectors and was deleted progressively by an exonuclease III-S1 technique. Plasmids containing progressively shorter DNA fragments were then tested for their capability to support replication by transformation of an E. coli polA strain. A minimal autonomous replication sequence (ARS) was delimited to 403 bp. Sequencing of the entire 5.8-kb region revealed that the minimal ARS contained two consensus DnaA boxes, three A + T-rich 21-mers, a transcriptional promoter leading rightwards, and potential integration host factor and factor of inversion stimulation binding sites. Database comparisons of deduced amino acid sequences revealed that open reading frames located around the ARS were homologous to genes often, but not always, found near bacterial chromosomal origins; these included identities with rpmH and rnpA in E. coli and identities with the 9K protein and 60K membrane protein in E. coli and Pseudomonas species. These and direct hybridization data suggested that the ARS was chromosomal and not associated with the resident plasmid QpH1. Two-dimensional agarose gel electrophoresis did not reveal the presence of initiating intermediates, indicating that the ARS did not initiate chromosome replication during laboratory growth of C. burnetii.
authors.affiliation: Department of Microbiology and Immunology, West Virginia University, Morgantown 26506-9177.
authors.forename: M
authors.initials: M
authors.lastname: Suhan
authors.forename: S Y
authors.initials: SY
authors.lastname: Chen
authors.forename: H A
authors.initials: HA
authors.lastname: Thompson
authors.forename: T A
authors.initials: TA
authors.lastname: Hoover
authors.forename: A
authors.initials: A
authors.lastname: Hill
authors.forename: J C
authors.initials: JC
authors.lastname: Williams
mesh_terms: D001483:Base Sequence; D003001:Cloning, Molecular / Q000379:methods; D016997:Coxiella burnetii / Q000235:genetics*; D017931:DNA Primers; D004261:DNA Replication / Q000235:genetics*; D004269:DNA, Bacterial / Q000235:genetics / Q000302:isolation & purification; D004587:Electrophoresis, Agar Gel; D015180:Electrophoresis, Gel, Two-Dimensional; D004926:Escherichia coli; D005822:Genetic Vectors; D007613:Kanamycin Resistance / Q000235:genetics*; D008969:Molecular Sequence Data; D010957:Plasmids; D016133:Polymerase Chain Reaction; D011815:R Factors / Q000235:genetics*; D015183:Restriction Mapping
chemical_list: D017931:DNA Primers; D004269:DNA, Bacterial