title: The pectin lyase-encoding gene (pnl) family from Glomerella cingulata: characterization of pnlA and its expression in yeast.
abstract: Oligodeoxyribonucleotide primers were designed from conserved amino acid (aa) sequences between pectin lyase D (PNLD) from Aspergillus niger and pectate lyases A and E (PELA/E) from Erwinia chrysanthemi. The polymerase chain reaction (PCR) was used with these primers to amplify genomic DNA from the plant pathogenic fungus Glomerella cingulata. Three different 220-bp fragments with homology to PNL-encoding genes from A. niger, and a 320-bp fragment with homology to PEL-encoding genes from Nicotiana tabacum and E. carotovora were cloned. One of the 220-bp PCR products (designated pnlA) was used as a probe to isolate a PNL-encoding gene from a lambda genomic DNA library prepared from G. cingulata. Nucleotide (nt) sequence data revealed that this gene has seven exons and codes for a putative 380-aa protein. The nt sequence of a cDNA clone, prepared using PCR, confirmed the presence of the six introns. The positions of the introns were different from the sites of the five introns present in the three PNL-encoding genes previously sequenced from A. niger. PNLA was synthesised in yeast by cloning the cDNA into the expression vector, pEMBLYex-4, and enzymatically active protein was secreted into the culture medium. Significantly higher expression was achieved when the context of the start codon, CACCATG, was mutated to CAAAATG, a consensus sequence commonly found in highly expressed yeast genes. The produced protein had an isoelectric point (pI) of 9.4, the same as that for the G. cingulata pnlA product.(ABSTRACT TRUNCATED AT 250 WORDS)
authors.affiliation: Molecular Genetics Group, Horticulture and Food Research Institute of New Zealand Ltd., Mt Albert, Auckland.
authors.forename: M D
authors.initials: MD
authors.lastname: Templeton
authors.forename: K R
authors.initials: KR
authors.lastname: Sharrock
authors.forename: J K
authors.initials: JK
authors.lastname: Bowen
authors.forename: R N
authors.initials: RN
authors.lastname: Crowhurst
authors.forename: E H
authors.initials: EH
authors.lastname: Rikkerink
mesh_terms: D000595:Amino Acid Sequence; D001203:Ascomycota / Q000201:enzymology / Q000235:genetics*; D001483:Base Sequence; D003001:Cloning, Molecular; D004271:DNA, Fungal; D015870:Gene Expression; D005800:Genes, Fungal; D008969:Molecular Sequence Data; D005810:Multigene Family; D011133:Polysaccharide-Lyases / Q000235:genetics*; D012441:Saccharomyces cerevisiae; D017386:Sequence Homology, Amino Acid
chemical_list: D004271:DNA, Fungal; D011133:Polysaccharide-Lyases; C027349:pectin lyase