title: Structure/function relationship study of Gln156, Glu160 and Glu189 in the active site of trichosanthin.
abstract: Trichosanthin is a protein used medicinally in China for abortifacient purposes. It is also an RNA N-glycosidase which inactivates eukaryotic ribosomes by removing adenine4324 from 28S rRNA. Site-directed mutagenesis was performed to probe the role of Gln156, Glu160 and Glu189 in the active site of trichosanthin. The purified altered proteins were assayed for their potency in inhibiting in vitro protein synthesis. The data indicate Glu160 is involved in the catalytic reaction. Kinetics studies suggest the carboxylate group of Glu160 serves to stabilize the transition-state complex. Similar to ricin A, the variant [E160A]trichosanthin is more potent than [E160D]trichosanthin. This is because Glu189 serves as a back-up of the carboxylate group in case Glu160 is mutated to alanine. However, removal of Glu189 in the presence of Glu160 does not affect the ID50 value drastically. An activity of 1800-fold less than that of the wild-type protein was found when both Glu160 and Glu189 were changed to alanine, indicating that some other residues in the active site are also taken part in the lowering of energy barrier for the catalytic reaction. Although Gln156 is highly conserved in related proteins, its mutation to alanine only slightly decreases the activity, showing that this residue does not participate directly in catalysis.
authors.affiliation: Department of Biochemistry and Biotechnology Laboratory, Chinese University of Hong Kong, Shatin.
authors.forename: K B
authors.initials: KB
authors.lastname: Wong
authors.forename: Y B
authors.initials: YB
authors.lastname: Ke
authors.forename: Y C
authors.initials: YC
authors.lastname: Dong
authors.forename: X B
authors.initials: XB
authors.lastname: Li
authors.forename: Y W
authors.initials: YW
authors.lastname: Guo
authors.forename: H W
authors.initials: HW
authors.lastname: Yeung
authors.forename: P C
authors.initials: PC
authors.lastname: Shaw
mesh_terms: D000595:Amino Acid Sequence; D001665:Binding Sites; D002384:Catalysis; D004926:Escherichia coli / Q000378:metabolism; D005973:Glutamine / Q000737:chemistry*; D005998:Glycine / Q000737:chemistry*; D006026:Glycoside Hydrolases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism / Q000494:pharmacology; D007700:Kinetics; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D010957:Plasmids; D014176:Protein Biosynthesis; D012270:Ribosomes / Q000187:drug effects*; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid; D013329:Structure-Activity Relationship; D015978:Trichosanthin / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism / Q000494:pharmacology
chemical_list: D005973:Glutamine; D015978:Trichosanthin; D006026:Glycoside Hydrolases; D005998:Glycine