Identification and simulation of new non-random statistical properties common to different populations of eukaryotic non-coding genes.
The autocorrelation function analysing the occurrence probability of the i-motif YRY(N)iYRY in genes allows the identification of mainly two periodicities modulo 2, 3 and the preferential occurrence of the motif YRY(N)6YRY (R = purine = adenine or guanine, Y = pyrimidine = cytosine or thymine, N = R or Y). These non-random genetic statistical properties can be simulated by an independent mixing of the three oligonucleotides YRYRYR, YRYYRY and YRY(N)6 (Arquès & Michel, 1990b). The problem investigated in this study is whether new properties can be identified in genes with other autocorrelation functions and also simulated with an oligonucleotide mixing model. The two autocorrelation functions analysing the occurrence probability of the i-motifs RRR(N)iRRR and YYY(N)iYYY simultaneously identify three new non-random genetic statistical properties: a short linear decrease, local maxima for i identical to 3[6] (i = 3, 9, etc) and a large exponential decrease. Furthermore, these properties are common to three different populations of eukaryotic non-coding genes: 5' regions, introns and 3' regions (see section 2). These three non-random properties can also be simulated by an independent mixing of the four oligonucleotides R8, Y8, RRRYRYRRR, YYYRYRYYY and large alternating R/Y series. The short linear decrease is a result of R8 and Y8, the local maxima for i identical to 3[6], of RRRYRYRRR and YYYRYRYYY, and the large exponential decrease, of large alternating R/Y series (section 3). The biological meaning of these results and their relation to the previous oligonucleotide mixing model are presented in the Discussion.
Arquès
D G
DG
Equipe de Biologie Théorique, Université de Franche-Comté, Laboratoire d'Informatique de Besançon, France.
Michel
C J
CJ
Orieux
K
K
D000818:Animals; D005075:Biological Evolution; D005796:Genes / Q000235:genetics*; D008957:Models, Genetic; D015233:Models, Statistical; D009154:Mutation / Q000235:genetics; D009841:Oligonucleotides / Q000235:genetics; D011336:Probability
D009841:Oligonucleotides