Noncoded residues as building blocks in the design of specific secondary structures: symmetrically disubstituted glycines and beta-alanine.
Structural changes can be induced in a peptide by selective substitution of coded alpha-amino acid residues by noncoded alpha-amino acid residues and the consequent production of analogues with modified structure and conformational preferences. In this review article we summarize the solid state structural results and the conformational preferences of two classes of "building blocks": (a) the linear and cyclic symmetrically alpha, alpha-disubstituted glycines in which either two identical n-alkyl groups replace the hydrogen atoms of the glycine residue or a cyclic aliphatic side-chain system is formed by linking the two alpha-carbon side chains, respectively; and (b) the beta-alanine residue. Examples, whenever possible, of the use of these residues for the elucidation of the bioactive conformation in the appropriate biological systems will be given.
Di Blasio
B
B
Department of Chemistry, University of Naples Federico II, Italy.
Pavone
V
V
Lombardi
A
A
Pedone
C
C
Benedetti
E
E
D000595:Amino Acid Sequence; D015195:Drug Design; D005998:Glycine / Q000031:analogs & derivatives*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010455:Peptides / Q000737:chemistry*; D010456:Peptides, Cyclic / Q000737:chemistry; D017433:Protein Structure, Secondary; D013329:Structure-Activity Relationship; D015091:beta-Alanine / Q000031:analogs & derivatives*
D010455:Peptides; D010456:Peptides, Cyclic; D015091:beta-Alanine; D005998:Glycine