Sequences with high propensity to form G-quartet structures in kinetoplast DNA from Phytomonas serpens.
Naturally occurring sequences containing repetitive guanine motifs have the potential to form tetraplex DNA. Phytomonas serpens minicircle DNA shows some regions where one strand is composed mainly of G and T (GT regions). These regions contain several stretches of contiguous guanines. An oligonucleotide was constructed with the sequence corresponding to one of these regions (Phyto-GT). It was demonstrated by native gel electrophoresis and methylation protection that Phyto-GT forms tetramolecular (G4), bimolecular (G'2) and unimolecular (G4') structures stabilized through G-quartets. Tetraplex DNA formation by this sequence could have biological relevance as it can be formed in physiological conditions and GT regions comprise approximately one-third of P. serpens and Crithidia oncopelti minicircles.
Laboratório de Biologia Molecular de Tripanosomatídeos, DBBM, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
D
D
Sá-Carvalho
Y M
YM
Traub-Cseko
D000818:Animals; D001483:Base Sequence; D003421:Crithidia / Q000235:genetics; D004270:DNA, Circular / Q000737:chemistry; D018105:DNA, Kinetoplast / Q000737:chemistry*; D016054:DNA, Protozoan / Q000737:chemistry*; D006147:Guanine / Q000737:chemistry*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D014351:Trypanosomatina / Q000145:classification / Q000235:genetics*
D004270:DNA, Circular; D018105:DNA, Kinetoplast; D016054:DNA, Protozoan; D006147:Guanine