Linear prediction and single-channel recording.
The measurement of individual single-channel events arising from the gating of ion channels provides a detailed data set from which the kinetic mechanism of a channel can be deduced. In many cases, the pattern of dwells in the open and closed states is very complex, and the kinetic mechanism and parameters are not easily determined. Assuming a Markov model for channel kinetics, the probability density function for open and closed time dwells should consist of a sum of decaying exponentials. One method of approaching the kinetic analysis of such a system is to determine the number of exponentials and the corresponding parameters which comprise the open and closed dwell time distributions. These can then be compared to the relaxations predicted from the kinetic model to determine, where possible, the kinetic constants. We report here the use of a linear technique, linear prediction/singular value decomposition, to determine the number of exponentials and the exponential parameters. Using simulated distributions and comparing with standard maximum-likelihood analysis, the singular value decomposition techniques provide advantages in some situations and are a useful adjunct to other single-channel analysis techniques.
Department of Pharmacology, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA.
A A
AA
Carter
R E
RE
Oswald
D000465:Algorithms; D005583:Fourier Analysis; D015640:Ion Channel Gating / Q000502:physiology; D007473:Ion Channels / Q000502:physiology*; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D008390:Markov Chains; D008954:Models, Biological; D018408:Patch-Clamp Techniques / Q000295:instrumentation*; D011897:Random Allocation
D007473:Ion Channels